Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0007760 Simmondsia chinensis HOM05D000976 ORTHO05D000847 3.5e-45 184.5 87 100.0
Sc07g0007730 Simmondsia chinensis HOM05D000976 ORTHO05D000847 8.6e-44 179.9 84 100.0
Hund13308 Selenicereus undatus HOM05D000976 ORTHO05D000847 4.6e-29 131.0 80 75.0
AUR62036495 Chenopodium quinoa HOM05D000976 ORTHO05D000847 6.6e-28 127.1 83 71.1
AUR62037075 Chenopodium quinoa HOM05D000976 ORTHO05D000847 1.5e-27 125.9 83 69.9
EL10Ac5g11647 Beta vulgaris HOM05D000976 ORTHO05D000847 1.9e-27 125.6 83 68.7
Ah.12g062090 Amaranthus hybridus HOM05D000976 ORTHO05D000847 9.5e-27 123.2 83 67.5
TPR.G20662 Trifolium pratense HOM05D000976 ORTHO05D000847 2.6e-24 115.2 81 65.4
arahy.Tifrunner.gnm1.ann1.QWRQ1F Arachis hypogaea HOM05D000976 ORTHO05D000847 7.5e-24 113.6 82 65.9
Dinv14557 Davidia involucrata HOM05D000976 ORTHO05D000847 1.3e-23 112.8 82 64.6
SGA_v2.0_scaffold240G44155 Striga asiatica HOM05D000976 ORTHO05D000847 2.2e-23 112.1 86 61.6
Dinv37042 Davidia involucrata HOM05D000976 ORTHO05D000847 2.9e-23 111.7 81 65.4
TWI34G0389 Tripterygium wilfordii HOM05D000976 ORTHO05D000847 2.9e-23 111.7 80 65.0
VMungo1383G3548 Vigna mungo HOM05D000976 ORTHO05D000847 2.9e-23 111.7 81 65.4
arahy.Tifrunner.gnm1.ann1.2J433J Arachis hypogaea HOM05D000976 ORTHO05D000847 4.9e-23 110.9 82 64.6
Medtr7g087440 Medicago truncatula HOM05D000976 ORTHO05D000847 6.4e-23 110.5 81 64.2
TWI32G0779 Tripterygium wilfordii HOM05D000976 ORTHO05D000847 6.4e-23 110.5 81 63.0
Atru.chr2.1602 Acer truncatum HOM05D000976 ORTHO05D000847 8.3e-23 110.2 81 64.2
Oeu034907.1 Olea europaea HOM05D000976 ORTHO05D000847 1.9e-22 109.0 81 61.7
Glyma.03G005000 Glycine max HOM05D000976 ORTHO05D000847 2.4e-22 108.6 81 65.4
MELO3C019155.2 Cucumis melo HOM05D000976 ORTHO05D000847 4.1e-22 107.8 81 61.7
CsaV3_4G029090 Cucumis sativus L. HOM05D000976 ORTHO05D000847 4.1e-22 107.8 81 61.7
Lj1g0011034 Lotus japonicus HOM05D000976 ORTHO05D000847 4.1e-22 107.8 81 64.2
Phvul.001G103100 Phaseolus vulgaris HOM05D000976 ORTHO05D000847 5.4e-22 107.5 81 63.0
Psat3g084600 Pisum sativum HOM05D000976 ORTHO05D000847 5.4e-22 107.5 81 63.0
TAR623G1304 Trochodendron aralioides HOM05D000976 ORTHO05D000847 5.4e-22 107.5 81 64.2
Cc09_g05540 Coffea canephora HOM05D000976 ORTHO05D000847 7.1e-22 107.1 81 63.0
Lalb_Chr14g0365061 Lupinus albus HOM05D000976 ORTHO05D000847 9.2e-22 106.7 82 63.4
Prupe.7G026000 Prunus persica HOM05D000976 ORTHO05D000847 9.2e-22 106.7 81 63.0
Cfa019881 Carpinus fangiana HOM05D000976 ORTHO05D000847 1.2e-21 106.3 83 62.7
PSO384G1114 Papaver somniferum HOM05D000976 ORTHO05D000847 1.2e-21 106.3 81 59.3
Aa31LG5G14120 Aethionema arabicum HOM05D000976 ORTHO05D000847 1.6e-21 105.9 85 58.8
Ca_03433_v3 Cicer arietinum L. HOM05D000976 ORTHO05D000847 2.1e-21 105.5 81 61.7
Oeu044218.1 Olea europaea HOM05D000976 ORTHO05D000847 2.1e-21 105.5 81 59.3
Thecc.05G236900 Theobroma cacao HOM05D000976 ORTHO05D000847 2.1e-21 105.5 80 61.2
CSS0049464 Camellia sinensis var. sinensis HOM05D000976 ORTHO05D000847 2.7e-21 105.1 81 64.2
Lalb_Chr24g0401221 Lupinus albus HOM05D000976 ORTHO05D000847 2.7e-21 105.1 82 61.0
ClCG04G006020 Citrullus lanatus HOM05D000976 ORTHO05D000847 3.5e-21 104.8 81 60.5
FvH4_1g29390 Fragaria vesca HOM05D000976 ORTHO05D000847 3.5e-21 104.8 81 60.5
FAN28G2590 Fragaria x ananassa HOM05D000976 ORTHO05D000847 3.5e-21 104.8 81 60.5
CiPaw.10G124200 Carya illinoinensis HOM05D000976 ORTHO05D000847 4.6e-21 104.4 81 63.0
Migut.K00187 Erythranthe guttata HOM05D000976 ORTHO05D000847 6.0e-21 104.0 81 60.5
Glyma.19G121000 Glycine max HOM05D000976 ORTHO05D000847 7.8e-21 103.6 81 61.7
FAN19G3159 Fragaria x ananassa HOM05D000976 ORTHO05D000847 1.0e-20 103.2 81 59.3
THA.LOC104802887 Tarenaya hassleriana HOM05D000976 ORTHO05D000847 1.0e-20 103.2 81 58.0
C05p63280 Brassica napus HOM05D000976 ORTHO05D000847 1.7e-20 102.4 81 59.3
BolC5t34991H Brassica oleracea HOM05D000976 ORTHO05D000847 1.7e-20 102.4 81 59.3
Nn3g19395 Nelumbo nucifera HOM05D000976 ORTHO05D000847 1.7e-20 102.4 81 60.5
Ciclev10032130m.g Citrus clementina HOM05D000976 ORTHO05D000847 2.3e-20 102.1 81 61.7
Eucgr.A02161 Eucalyptus grandis HOM05D000976 ORTHO05D000847 2.3e-20 102.1 80 62.5
GSVIVG01029902001 Vitis vinifera HOM05D000976 ORTHO05D000847 2.3e-20 102.1 81 60.5
BcaC05g30263 Brassica carinata HOM05D000976 ORTHO05D000847 3.9e-20 101.3 81 56.8
MD14G1012400 Malus domestica HOM05D000976 ORTHO05D000847 3.9e-20 101.3 81 60.5
unitig_0.g2670 Utricularia gibba HOM05D000976 ORTHO05D000847 3.9e-20 101.3 85 56.5
QL07p016023 Quercus lobata HOM05D000976 ORTHO05D000847 5.1e-20 100.9 83 61.4
ECA248G1781 Erigeron canadensis HOM05D000976 ORTHO05D000847 6.6e-20 100.5 81 53.1
FAN26G3358 Fragaria x ananassa HOM05D000976 ORTHO05D000847 6.6e-20 100.5 81 58.0
Sp3g02600 Schrenkiella parvula HOM05D000976 ORTHO05D000847 8.6e-20 100.1 81 58.0
Sed0015567 Sechium edule HOM05D000976 ORTHO05D000847 8.6e-20 100.1 82 61.0
Duzib106G0936 Durio zibethinus HOM05D000976 ORTHO05D000847 1.1e-19 99.8 80 60.0
Hma1.2p1_0823F.1_g224670 Hydrangea macrophylla HOM05D000976 ORTHO05D000847 1.1e-19 99.8 81 59.3
BcaC05g29866 Brassica carinata HOM05D000976 ORTHO05D000847 1.5e-19 99.4 81 56.8
Duzib177G1033 Durio zibethinus HOM05D000976 ORTHO05D000847 1.5e-19 99.4 80 55.0
Gohir.D13G165300 Gossypium hirsutum HOM05D000976 ORTHO05D000847 1.5e-19 99.4 78 60.3
Gorai.013G197400 Gossypium raimondii HOM05D000976 ORTHO05D000847 1.5e-19 99.4 78 60.3
Manes.08G155500 Manihot esculenta HOM05D000976 ORTHO05D000847 1.5e-19 99.4 81 58.0
Os03g0322800 Oryza sativa ssp. japonica HOM05D000976 ORTHO05D000847 1.9e-19 99.0 83 57.8
PSO339G5356 Papaver somniferum HOM05D000976 ORTHO05D000847 1.9e-19 99.0 82 57.3
Rhsim03G0044600 Rhododendron simsii HOM05D000976 ORTHO05D000847 2.5e-19 98.6 82 54.9
AL3G13380 Arabidopsis lyrata HOM05D000976 ORTHO05D000847 3.3e-19 98.2 82 56.1
AT3G03610 Arabidopsis thaliana HOM05D000976 ORTHO05D000847 3.3e-19 98.2 82 56.1
A05p43700 Brassica napus HOM05D000976 ORTHO05D000847 3.3e-19 98.2 81 56.8
BraA05t23109Z Brassica rapa HOM05D000976 ORTHO05D000847 3.3e-19 98.2 81 56.8
CANSAT01G0258 Cannabis sativa HOM05D000976 ORTHO05D000847 3.3e-19 98.2 82 61.0
Carub.0003s0277 Capsella rubella HOM05D000976 ORTHO05D000847 3.3e-19 98.2 82 56.1
MD12G1014800 Malus domestica HOM05D000976 ORTHO05D000847 3.3e-19 98.2 81 59.3
Thhalv10021157m.g Eutrema salsugineum HOM05D000976 ORTHO05D000847 4.3e-19 97.8 81 56.8
Lj2A413T17 Lonicera japonica HOM05D000976 ORTHO05D000847 4.3e-19 97.8 85 55.3
MBI19_g13595_MAGBIO Magnolia biondii HOM05D000976 ORTHO05D000847 4.3e-19 97.8 84 57.1
SalBow1G0965 Salvia bowleyana HOM05D000976 ORTHO05D000847 5.6e-19 97.4 81 56.8
DCAR_013501 Daucus carota HOM05D000976 ORTHO05D000847 7.3e-19 97.1 81 58.0
RcHm_v2.0_Chr3g0495561 Rosa chinensis HOM05D000976 ORTHO05D000847 1.2e-18 96.3 82 59.8
unitig_748.g7219 Utricularia gibba HOM05D000976 ORTHO05D000847 1.2e-18 96.3 82 56.1
MSTRG.26198 Avicennia marina HOM05D000976 ORTHO05D000847 1.6e-18 95.9 81 56.8
Gohir.A13G160100 Gossypium hirsutum HOM05D000976 ORTHO05D000847 2.1e-18 95.5 78 59.0
COL.COLO4_33465 Corchorus olitorius HOM05D000976 ORTHO05D000847 2.8e-18 95.1 80 57.5
PGR042G3098 Punica granatum HOM05D000976 ORTHO05D000847 2.8e-18 95.1 81 54.3
vmacro07621 Vaccinium macrocarpon HOM05D000976 ORTHO05D000847 2.8e-18 95.1 81 53.1
Zm00001eb015380 Zea mays HOM05D000976 ORTHO05D000847 3.6e-18 94.7 83 55.4
CAN.G128.117 Capsicum annuum HOM05D000976 ORTHO05D000847 4.7e-18 94.4 81 58.0
CARHR077650 Cardamine hirsuta HOM05D000976 ORTHO05D000847 4.7e-18 94.4 82 54.9
BcaNung05457 Brassica carinata HOM05D000976 ORTHO05D000847 6.2e-18 94.0 83 54.2
Nitab4.5_0010533g0020 Nicotiana tabacum HOM05D000976 ORTHO05D000847 6.2e-18 94.0 82 56.1
Potri.013G069000 Populus trichocarpa HOM05D000976 ORTHO05D000847 6.2e-18 94.0 82 56.1
BcaC09g47720 Brassica carinata HOM05D000976 ORTHO05D000847 8.1e-18 93.6 82 54.9
BNapus_Darmor_BZH_scaffold_162p00230 Brassica napus HOM05D000976 ORTHO05D000847 8.1e-18 93.6 82 54.9
BolC1t05823H Brassica oleracea HOM05D000976 ORTHO05D000847 8.1e-18 93.6 82 54.9
Nitab4.5_0000062g0580 Nicotiana tabacum HOM05D000976 ORTHO05D000847 2.4e-17 92.0 84 53.6
Peaxi162Scf00153g00079 Petunia axillaris HOM05D000976 ORTHO05D000847 2.4e-17 92.0 82 54.9
THA.LOC104820808 Tarenaya hassleriana HOM05D000976 ORTHO05D000847 4.0e-17 91.3 86 54.7
A01p41500 Brassica napus HOM05D000976 ORTHO05D000847 5.2e-17 90.9 84 56.0
BNapus_Darmor_BZH_scaffold_78p00210 Brassica napus HOM05D000976 ORTHO05D000847 5.2e-17 90.9 84 56.0
Solyc10g081270.2 Solanum lycopersicum HOM05D000976 ORTHO05D000847 5.2e-17 90.9 81 54.3
Sopen10g031770 Solanum pennellii HOM05D000976 ORTHO05D000847 5.2e-17 90.9 81 54.3
PGSC0003DMG400028206 Solanum tuberosum HOM05D000976 ORTHO05D000847 5.2e-17 90.9 81 54.3
Lsat_1_v5_gn_5_154440 Lactuca sativa HOM05D000976 ORTHO05D000847 6.8e-17 90.5 83 44.6
BraA01t04573Z Brassica rapa HOM05D000976 ORTHO05D000847 1.5e-16 89.4 85 52.9
Sabra13G0059900 Salix brachista HOM05D000976 ORTHO05D000847 2.0e-16 89.0 83 55.4
HanXRQChr13g0406461 Helianthus annuus HOM05D000976 ORTHO05D000847 3.8e-15 84.7 81 46.9
Manes.09G134700 Manihot esculenta HOM05D000976 ORTHO05D000847 3.8e-15 84.7 83 48.2
AagrBONN_evm.TU.Sc2ySwM_117.56 Anthoceros agrestis HOM05D000976 ORTHO05D000847 1.1e-11 73.2 85 45.9
SEGI_04579 Sequoiadendron giganteum HOM05D000976 ORTHO05D000847 4.3e-11 71.2 83 47.0
Pp3c9_8380 Physcomitrium patens HOM05D000976 ORTHO05D000847 1.4e-09 66.2 87 41.4
SMO364G0853 Selaginella moellendorffii HOM05D000976 ORTHO05D000847 3.1e-09 65.1 86 38.4
ATR0307G076 Amborella trichopoda HOM05D000976 ORTHO05D000847 1.5e-08 62.8 44 65.9
Gohir.D11G238300 Gossypium hirsutum HOM05D000976 ORTHO05D000847 2.0e-08 62.4 78 46.2
Gorai.007G252300 Gossypium raimondii HOM05D000976 ORTHO05D000847 7.6e-08 60.5 78 43.6
CDE04G2741 Ceratophyllum demersum HOM05D000976 ORTHO05D000847 1.7e-07 59.3 81 39.5
Mapoly0037s0066 Marchantia polymorpha HOM05D000976 ORTHO05D000847 1.7e-07 59.3 102 37.3
Actinidia37842 Actinidia chinensis HOM05D000976 ORTHO05D000847 1.4e-06 56.2 37 62.2
CSS0003517 Camellia sinensis var. sinensis HOM05D000976 ORTHO05D000847 4.2e-06 54.7 81 43.2
CSS0038350 Camellia sinensis var. sinensis HOM05D000976 ORTHO05D000847 4.2e-06 54.7 81 43.2
CSS0038793 Camellia sinensis var. sinensis HOM05D000976 ORTHO05D000847 4.2e-06 54.7 81 43.2
CSS0050151 Camellia sinensis var. sinensis HOM05D000976 ORTHO05D000847 4.2e-06 54.7 81 43.2


User provided reference genes

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