Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.7e-197 691.8 355 100.0
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 3.8e-106 389.0 311 65.9
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 8.5e-106 387.9 300 69.3
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 9.4e-105 384.4 310 65.5
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.2e-104 384.0 313 64.5
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.1e-104 383.3 306 66.7
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.1e-104 383.3 310 65.2
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.7e-104 382.9 288 68.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.0e-103 380.9 301 66.1
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.4e-103 380.6 310 64.8
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 6.7e-103 378.3 344 61.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.5e-102 377.1 284 68.3
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 2.0e-102 376.7 310 64.5
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.3e-102 375.9 311 64.3
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.7e-102 375.2 328 61.0
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 9.7e-102 374.4 304 65.5
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 8.2e-101 371.3 292 67.1
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.4e-100 370.5 329 60.2
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.4e-100 370.5 310 62.9
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.4e-100 370.5 286 66.8
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.8e-100 370.2 303 64.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 3.1e-100 369.4 336 61.6
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 5.3e-100 368.6 276 68.5
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 5.3e-100 368.6 322 63.0
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 5.3e-100 368.6 302 64.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 6.9e-100 368.2 324 63.0
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.0e-99 366.7 288 66.7
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 2.6e-99 366.3 342 59.4
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.9e-99 365.2 319 61.8
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.0e-98 364.4 288 66.3
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-98 364.4 288 66.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.0e-98 364.4 288 66.3
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.7e-98 363.6 313 64.5
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.2e-98 363.2 339 59.6
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.9e-98 362.8 339 60.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.0e-98 362.1 283 67.1
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 6.5e-98 361.7 313 62.9
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 8.5e-98 361.3 269 68.8
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-97 360.5 284 66.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.5e-97 359.8 311 64.3
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 9.4e-97 357.8 288 65.3
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 6.1e-96 355.1 317 60.3
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.8e-95 353.6 313 60.7
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.3e-95 353.2 314 62.4
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.9e-95 352.4 284 65.8
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 5.1e-95 352.1 313 65.2
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 8.8e-95 351.3 311 60.8
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.5e-94 350.5 308 62.7
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 7.4e-94 348.2 312 61.2
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 3.7e-93 345.9 284 65.5
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-92 344.0 284 65.5
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.8e-92 343.6 310 61.6
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 3.1e-92 342.8 284 65.5
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 3.1e-92 342.8 284 65.5
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 4.1e-92 342.4 302 62.3
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 5.3e-92 342.0 313 60.7
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 7.0e-92 341.7 283 64.7
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 9.1e-92 341.3 309 60.8
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.5e-91 340.5 295 62.7
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 1.5e-91 340.5 295 62.7
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.5e-91 340.5 302 59.9
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.0e-91 340.1 308 60.7
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 2.0e-91 340.1 283 62.2
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.6e-91 339.7 316 60.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.5e-91 339.3 280 64.6
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 4.5e-91 339.0 299 62.2
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 4.5e-91 339.0 307 59.6
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 1.0e-90 337.8 280 64.3
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 1.3e-90 337.4 318 60.1
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-90 337.0 283 62.5
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.7e-90 337.0 283 62.5
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 2.2e-90 336.7 338 58.0
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 2.2e-90 336.7 367 53.1
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 3.8e-90 335.9 283 62.9
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 5.0e-90 335.5 322 59.3
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 6.5e-90 335.1 300 61.0
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 6.5e-90 335.1 283 61.8
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.1e-89 334.3 302 60.6
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.9e-89 333.6 295 62.0
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.9e-89 333.6 283 63.3
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 3.2e-89 332.8 293 61.1
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 7.2e-89 331.6 292 61.0
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.6e-88 330.5 335 58.2
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 2.7e-88 329.7 332 57.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 4.7e-88 328.9 342 58.2
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 6.1e-88 328.6 294 60.9
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 1.0e-87 327.8 308 59.7
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.8e-87 327.0 305 58.7
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 3.9e-87 325.9 345 53.9
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 2.6e-86 323.2 292 60.6
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 3.3e-86 322.8 285 62.5
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 7.4e-86 321.6 288 62.2
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 1.3e-85 320.9 282 61.7
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 6.3e-85 318.5 295 60.7
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 1.1e-84 317.8 349 54.7
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.4e-84 316.6 308 56.8
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.4e-84 316.6 308 56.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.6e-83 313.9 292 56.5
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 3.5e-83 312.8 294 60.5
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.1e-80 303.5 293 59.4
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 9.7e-78 294.7 283 59.0
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.8e-76 290.4 308 53.9
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 2.7e-75 286.6 318 52.2
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 4.5e-75 285.8 242 61.2
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 8.5e-74 281.6 322 52.8
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.1e-73 281.2 238 61.3
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 8.3e-69 265.0 287 55.4
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.9e-66 256.5 238 59.7
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 2.1e-64 250.4 229 56.8
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 1.9e-52 210.7 129 81.4
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.5e-51 206.5 212 56.6
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 5.2e-47 192.6 156 67.9
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.9e-45 186.8 121 77.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.1e-39 168.3 320 38.1
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.1e-39 166.8 295 39.7
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 5.8e-30 136.0 319 34.8
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 7.8e-27 125.6 138 48.6
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 9.6e-25 118.6 88 70.5
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 8.1e-24 115.5 110 54.5
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 8.1e-24 115.5 101 56.4
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.9e-21 107.1 88 64.8
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.5e-19 100.1 106 60.4
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.9e-18 96.7 103 54.4
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 6.6e-18 95.9 153 39.2
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.8e-07 61.2 73 47.9


User provided reference genes

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