Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 1.4e-205 719.5 393 100.0
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 4.5e-92 342.4 472 47.9
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 1.8e-88 330.5 430 49.8
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 8.8e-88 328.2 440 50.7
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 5.7e-87 325.5 421 49.9
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 9.7e-87 324.7 430 50.7
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.3e-86 324.3 386 52.8
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 4.8e-86 322.4 445 48.1
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 1.1e-85 321.2 397 49.4
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 2.4e-85 320.1 448 46.7
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 4.1e-85 319.3 388 49.0
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 4.1e-85 319.3 465 46.7
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 7.0e-85 318.5 440 47.3
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 2.7e-84 316.6 430 51.2
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 2.9e-83 313.2 410 46.3
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 6.5e-83 312.0 440 47.7
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 4.2e-82 309.3 441 47.6
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 4.2e-82 309.3 427 47.3
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 5.5e-82 308.9 454 46.3
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 1.2e-81 307.8 389 48.1
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 1.2e-81 307.8 390 49.0
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 2.1e-81 307.0 253 62.5
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 1.8e-80 303.9 412 47.1
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 4.0e-80 302.8 451 44.8
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 8.8e-80 301.6 429 45.9
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 4.4e-79 299.3 407 48.2
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 7.5e-79 298.5 417 48.0
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 2.8e-78 296.6 354 50.6
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 2.8e-78 296.6 427 46.4
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 2.8e-78 296.6 428 48.6
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 3.7e-78 296.2 413 47.7
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 3.7e-78 296.2 416 45.2
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 1.4e-77 294.3 337 51.3
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 4.1e-77 292.7 345 49.6
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 5.4e-77 292.4 460 43.5
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 1.6e-76 290.8 425 47.1
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.0e-76 290.4 427 45.9
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 2.7e-76 290.0 469 44.3
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 3.5e-76 289.7 456 44.7
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 1.7e-75 287.3 413 45.8
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 5.0e-75 285.8 411 44.8
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 5.0e-75 285.8 415 43.9
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 8.6e-75 285.0 380 47.1
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 8.6e-75 285.0 444 43.7
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 8.6e-75 285.0 433 43.9
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 2.5e-74 283.5 414 47.1
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 3.2e-74 283.1 439 44.9
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 7.2e-74 282.0 416 45.2
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 2.1e-73 280.4 438 44.1
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 2.1e-73 280.4 417 45.6
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 3.6e-73 279.6 440 44.1
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 3.6e-73 279.6 386 44.0
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 1.0e-72 278.1 398 46.0
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.8e-72 277.3 335 48.1
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 2.6e-71 273.5 439 44.0
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 2.6e-71 273.5 433 42.5
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 2.6e-71 273.5 442 43.4
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 9.8e-71 271.6 190 66.8
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 1.3e-70 271.2 238 58.4
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 1.7e-70 270.8 385 43.9
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.2e-70 270.4 314 49.7
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 3.7e-70 269.6 315 47.6
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 3.7e-70 269.6 226 57.5
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 6.3e-70 268.9 425 42.1
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 6.3e-70 268.9 427 43.6
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 8.3e-70 268.5 428 43.9
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 2.4e-69 266.9 323 47.4
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 2.0e-68 263.8 423 41.8
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 4.5e-68 262.7 239 56.1
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 5.9e-68 262.3 315 47.3
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 1.3e-67 261.2 507 39.6
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 1.3e-67 261.2 331 45.0
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 2.9e-67 260.0 343 45.8
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 2.9e-67 260.0 343 45.8
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.1e-66 258.1 336 46.1
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 3.3e-66 256.5 271 55.4
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 4.3e-66 256.1 328 45.4
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 7.3e-66 255.4 444 40.5
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 9.5e-66 255.0 238 55.9
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 9.5e-66 255.0 438 41.6
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 1.2e-65 254.6 328 46.0
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 1.6e-65 254.2 338 44.4
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 6.1e-65 252.3 340 43.8
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 6.1e-65 252.3 303 47.9
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 8.0e-65 251.9 322 46.6
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 2.3e-64 250.4 337 43.9
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 6.8e-64 248.8 378 45.0
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 1.6e-60 237.7 227 53.7
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 1.9e-58 230.7 314 42.0
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 6.2e-57 225.7 332 46.1
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 2.0e-55 220.7 412 38.8
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 5.8e-55 219.2 354 44.4
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 1.3e-54 218.0 348 39.7
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 1.3e-51 208.0 285 40.4
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 3.0e-51 206.8 411 39.9
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 6.6e-51 205.7 343 35.3
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 6.6e-51 205.7 144 66.7
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 1.6e-49 201.1 174 52.9
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 2.8e-49 200.3 166 52.4
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 8.1e-49 198.7 350 34.3
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 1.3e-46 191.4 249 38.6
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 2.1e-44 184.1 341 41.9
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.7e-44 183.7 121 68.6
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.7e-41 172.9 122 66.4
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 4.9e-38 162.9 279 43.4
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 1.7e-35 154.5 225 41.3
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 2.1e-33 147.5 166 48.2
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 2.1e-28 131.0 115 58.3
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 7.8e-28 129.0 207 42.0
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 5.6e-26 122.9 169 37.3
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 4.8e-25 119.8 177 37.3
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 1.5e-23 114.8 72 76.4
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 1.1e-21 108.6 91 63.7
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 4.6e-20 103.2 187 42.2
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 7.9e-20 102.4 116 40.5
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 9.6e-18 95.5 159 34.6
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 1.9e-10 71.2 316 30.4
ECA232G2176 Erigeron canadensis HOM05D006487 ORTHO05D007982 1.1e-08 65.5 194 38.1
SMO117G0021 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 6.9e-08 62.8 81 39.5


User provided reference genes

Program Settings