Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 4.8e-80 301.2 165 100.0
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 3.1e-34 149.1 149 57.7
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 2.0e-33 146.4 141 58.9
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.6e-33 146.0 98 74.5
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.6e-33 146.0 145 58.6
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 9.9e-33 144.1 140 58.6
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 9.9e-33 144.1 140 58.6
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 9.9e-33 144.1 130 60.8
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.3e-32 143.7 140 57.9
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 1.3e-32 143.7 102 71.6
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 1.7e-32 143.3 125 61.6
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 1.7e-32 143.3 146 57.5
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 3.8e-32 142.1 125 61.6
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 3.8e-32 142.1 142 52.8
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 6.4e-32 141.4 104 69.2
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 8.4e-32 141.0 140 56.4
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.1e-31 140.6 107 63.6
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.4e-31 140.2 150 52.7
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.9e-31 139.8 89 74.2
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.9e-31 139.8 115 61.7
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 3.2e-31 139.0 116 63.8
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 4.2e-31 138.7 85 80.0
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 4.2e-31 138.7 114 64.9
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 4.2e-31 138.7 112 64.3
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 4.2e-31 138.7 86 75.6
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 4.2e-31 138.7 111 65.8
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 4.2e-31 138.7 119 61.3
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 5.4e-31 138.3 111 64.0
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 5.4e-31 138.3 89 74.2
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 7.1e-31 137.9 85 75.3
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 7.1e-31 137.9 85 75.3
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 9.3e-31 137.5 114 62.3
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.2e-30 137.1 83 80.7
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 1.6e-30 136.7 83 75.9
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.6e-30 136.7 144 51.4
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.6e-30 136.7 143 52.4
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.1e-30 136.3 119 58.0
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 2.1e-30 136.3 118 61.0
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.1e-30 136.3 113 61.1
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 2.1e-30 136.3 113 60.2
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.7e-30 136.0 97 68.0
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 2.7e-30 136.0 106 64.2
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.7e-30 136.0 114 61.4
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 3.5e-30 135.6 111 64.0
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 4.6e-30 135.2 95 68.4
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 4.6e-30 135.2 96 71.9
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 4.6e-30 135.2 85 74.1
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 6.0e-30 134.8 90 74.4
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 6.0e-30 134.8 110 63.6
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 6.0e-30 134.8 113 62.8
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 6.0e-30 134.8 97 70.1
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 7.8e-30 134.4 116 59.5
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 7.8e-30 134.4 113 61.9
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.0e-29 134.0 83 77.1
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 1.0e-29 134.0 115 61.7
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 1.0e-29 134.0 90 74.4
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.0e-29 134.0 90 71.1
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.3e-29 133.7 90 73.3
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 1.3e-29 133.7 146 52.1
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.3e-29 133.7 139 52.5
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.7e-29 133.3 90 73.3
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.7e-29 133.3 114 59.6
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 1.7e-29 133.3 105 66.7
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 3.9e-29 132.1 89 73.0
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 3.9e-29 132.1 90 74.4
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 6.6e-29 131.3 139 54.0
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 1.5e-28 130.2 111 61.3
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.5e-28 130.2 97 69.1
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 1.9e-28 129.8 98 65.3
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.5e-28 129.4 85 72.9
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.5e-28 129.4 83 71.1
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 2.5e-28 129.4 143 49.7
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 3.3e-28 129.0 110 61.8
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 3.3e-28 129.0 74 82.4
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 5.6e-28 128.3 82 75.6
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.6e-28 128.3 85 71.8
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 5.6e-28 128.3 79 75.9
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 9.6e-28 127.5 90 71.1
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 9.6e-28 127.5 90 71.1
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 1.6e-27 126.7 90 70.0
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 1.6e-27 126.7 90 70.0
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 1.6e-27 126.7 90 70.0
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 1.6e-27 126.7 90 70.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.6e-27 126.7 110 60.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 2.1e-27 126.3 112 58.0
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 3.6e-27 125.6 111 59.5
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 6.2e-27 124.8 112 58.0
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 6.2e-27 124.8 77 76.6
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.1e-26 124.0 148 50.0
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 1.1e-26 124.0 82 69.5
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 1.8e-26 123.2 89 70.8
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 3.1e-26 122.5 143 48.3
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 4.0e-26 122.1 90 68.9
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.0e-26 122.1 148 49.3
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 5.3e-26 121.7 110 58.2
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 9.0e-26 120.9 136 49.3
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 9.0e-26 120.9 136 49.3
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 1.2e-25 120.6 83 67.5
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.5e-25 120.2 99 60.6
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.5e-25 120.2 69 78.3
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 2.0e-25 119.8 136 53.7
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 2.0e-25 119.8 114 52.6
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 2.6e-25 119.4 83 65.1
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 3.4e-25 119.0 82 67.1
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 9.9e-25 117.5 83 67.5
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 1.3e-24 117.1 83 66.3
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.2e-24 116.3 143 46.2
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.8e-24 115.5 110 54.5
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 4.9e-24 115.2 78 66.7
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 4.9e-24 115.2 143 45.5
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 1.4e-23 113.6 82 68.3
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.9e-23 113.2 110 54.5
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 4.2e-23 112.1 83 62.7
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 9.3e-23 110.9 118 50.8
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 6.0e-22 108.2 145 44.8
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 3.0e-21 105.9 91 65.9
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 1.9e-20 103.2 68 73.5
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.6e-19 100.1 112 59.8
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.6e-19 100.1 87 60.9
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 1.3e-16 90.5 67 68.7
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 1.3e-16 90.5 67 68.7
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 1.7e-16 90.1 69 65.2
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 3.8e-16 89.0 73 58.9
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 6.4e-16 88.2 110 47.3
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 1.6e-14 83.6 67 62.7
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.1e-12 77.4 59 57.6
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-12 77.0 59 57.6
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.5e-12 77.0 59 57.6
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 3.3e-12 75.9 59 55.9
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 2.1e-11 73.2 83 50.6
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.8e-10 70.1 63 60.3
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 2.0e-09 66.6 69 52.2
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 7.6e-09 64.7 47 59.6
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 4.2e-07 58.9 48 58.3


User provided reference genes

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