Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 4.9e-125 451.1 215 100.0
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 4.3e-113 411.4 213 90.1
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-112 409.8 213 90.1
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 1.3e-112 409.8 213 90.1
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 2.1e-112 409.1 213 89.7
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 3.7e-112 408.3 213 89.2
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 3.7e-112 408.3 213 89.2
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 4.8e-112 407.9 213 90.1
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 6.3e-112 407.5 213 88.7
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 6.3e-112 407.5 213 88.3
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.4e-111 405.6 214 90.7
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 2.4e-111 405.6 213 88.7
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.1e-111 405.2 213 87.8
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 3.1e-111 405.2 213 89.2
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 3.1e-111 405.2 213 88.3
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 5.3e-111 404.4 213 88.3
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 5.3e-111 404.4 213 88.3
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 1.5e-110 402.9 213 88.3
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 2.0e-110 402.5 214 89.3
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.4e-110 401.7 217 86.6
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 5.9e-110 401.0 213 88.3
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 5.9e-110 401.0 214 87.9
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 1.3e-109 399.8 213 87.8
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 6.5e-109 397.5 214 87.4
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 6.5e-109 397.5 213 87.3
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 8.4e-109 397.1 214 87.9
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.1e-108 396.7 217 86.6
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 1.1e-108 396.7 213 88.7
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 1.4e-108 396.4 213 86.9
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.9e-108 396.0 214 86.9
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.9e-108 396.0 214 89.3
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 3.2e-108 395.2 213 86.4
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 7.2e-108 394.0 213 88.3
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 1.2e-107 393.3 216 86.1
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.6e-107 392.9 213 85.9
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 2.1e-107 392.5 213 86.4
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.1e-107 392.5 235 80.0
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 2.7e-107 392.1 229 81.7
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 4.6e-107 391.3 213 84.5
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 7.9e-107 390.6 213 85.4
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.3e-106 389.8 214 87.9
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.3e-106 389.8 214 87.9
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 1.8e-106 389.4 214 86.4
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 3.9e-106 388.3 215 84.2
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 3.9e-106 388.3 213 84.0
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 5.1e-106 387.9 214 87.4
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 8.7e-106 387.1 215 83.7
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.5e-105 386.3 215 83.7
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 7.4e-105 384.0 214 86.0
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 9.7e-105 383.6 215 83.3
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 1.3e-104 383.3 213 85.4
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-104 383.3 214 86.0
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.6e-104 382.9 214 85.5
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 2.2e-104 382.5 215 83.3
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 4.8e-104 381.3 210 83.3
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 8.2e-104 380.6 223 82.1
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.1e-103 380.2 215 82.8
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 6.9e-103 377.5 213 81.7
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 6.9e-103 377.5 198 88.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.5e-102 376.3 213 83.6
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 1.5e-102 376.3 214 82.7
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 2.0e-102 375.9 214 82.2
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 2.0e-102 375.9 198 86.9
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.6e-102 375.6 214 81.3
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 2.6e-102 375.6 215 81.4
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 3.4e-102 375.2 214 81.3
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 1.0e-101 373.6 214 81.3
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.0e-101 373.6 213 82.2
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.0e-101 373.6 213 84.5
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 1.7e-101 372.9 214 80.8
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 2.2e-101 372.5 214 80.4
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 2.2e-101 372.5 214 80.4
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.2e-101 372.5 214 80.4
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 3.8e-101 371.7 198 87.9
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 8.5e-101 370.5 214 83.2
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 4.2e-100 368.2 214 79.9
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 2.1e-99 365.9 218 81.2
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.1e-99 365.9 184 91.8
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 1.8e-98 362.8 214 78.5
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.5e-97 359.8 217 77.0
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 4.3e-97 358.2 215 78.1
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 5.7e-97 357.8 190 89.5
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 7.4e-97 357.5 238 73.9
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 9.7e-97 357.1 196 85.2
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 9.7e-97 357.1 180 91.1
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 9.7e-97 357.1 190 87.4
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 1.7e-96 356.3 184 89.1
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.7e-96 355.1 178 91.0
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 3.7e-96 355.1 188 87.8
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 4.8e-96 354.8 203 81.3
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 4.8e-96 354.8 198 85.4
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.1e-95 353.6 215 77.2
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 1.8e-95 352.8 215 77.7
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.4e-95 352.4 190 86.3
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 3.1e-95 352.1 188 85.1
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 6.9e-95 350.9 189 87.3
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 6.9e-95 350.9 217 74.7
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 7.7e-94 347.4 197 81.7
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 2.4e-87 325.9 207 73.4
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.1e-87 325.1 193 74.1
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 3.5e-86 322.0 192 77.6
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 7.7e-86 320.9 193 72.5
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 4.2e-84 315.1 212 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.6e-78 296.6 192 68.8
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 8.0e-75 284.3 143 90.2
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-74 283.5 170 80.0
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.4e-74 283.5 170 80.0
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 5.7e-73 278.1 196 65.8
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 1.3e-72 276.9 143 86.7
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 3.1e-71 272.3 131 93.9
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.0e-66 257.3 133 88.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 6.8e-66 254.6 131 87.8
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 3.8e-61 238.8 128 83.6
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.5e-60 236.1 122 86.9
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.9e-56 222.6 124 83.9
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 1.6e-54 216.9 144 72.2
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.2e-46 190.7 106 84.9
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.9e-39 166.8 89 86.5
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.9e-39 166.8 91 85.7
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.0e-33 146.7 86 82.6
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 3.5e-30 136.0 82 76.8
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 7.6e-25 118.2 208 34.1
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 7.8e-22 108.2 229 33.2
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 3.5e-14 82.8 38 94.7
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 2.3e-13 80.1 83 55.4
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-11 74.3 64 57.8
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 2.6e-09 66.6 41 68.3
MD12G1146300 Malus domestica HOM05D000026 ORTHO05D000094 3.5e-06 56.2 67 49.3


User provided reference genes

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