Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0006490 Simmondsia chinensis HOM05D007653 ORTHO05D009670 3.4e-147 525.0 271 100.0
AUR62030507 Chenopodium quinoa HOM05D007653 ORTHO05D009670 2.0e-38 163.7 293 41.0
EL10Ac5g12516 Beta vulgaris HOM05D007653 ORTHO05D009670 4.6e-35 152.5 283 40.3
Duzib093G1250 Durio zibethinus HOM05D007653 ORTHO05D009670 2.3e-31 140.2 304 37.2
Thecc.05G009700 Theobroma cacao HOM05D007653 ORTHO05D009670 3.1e-31 139.8 279 37.6
Dinv08443 Davidia involucrata HOM05D007653 ORTHO05D009670 4.9e-29 132.5 272 38.6
Gorai.002G265600 Gossypium raimondii HOM05D007653 ORTHO05D009670 1.9e-28 130.6 260 36.2
Gohir.D01G218900 Gossypium hirsutum HOM05D007653 ORTHO05D009670 3.2e-28 129.8 260 36.2
COL.COLO4_14486 Corchorus olitorius HOM05D007653 ORTHO05D009670 1.6e-27 127.5 285 37.2
Glyma.03G051200 Glycine max HOM05D007653 ORTHO05D009670 2.1e-27 127.1 290 36.6
Gohir.A01G229000 Gossypium hirsutum HOM05D007653 ORTHO05D009670 2.1e-27 127.1 260 35.8
VMungo0331G0216 Vigna mungo HOM05D007653 ORTHO05D009670 1.3e-26 124.4 289 35.3
Lj3g0004323 Lotus japonicus HOM05D007653 ORTHO05D009670 3.0e-26 123.2 293 34.5
Glyma.01G124000 Glycine max HOM05D007653 ORTHO05D009670 5.1e-26 122.5 292 35.3
RcHm_v2.0_Chr3g0462281 Rosa chinensis HOM05D007653 ORTHO05D009670 5.1e-26 122.5 272 35.7
AUR62030786 Chenopodium quinoa HOM05D007653 ORTHO05D009670 8.6e-26 121.7 253 39.1
DCAR_028874 Daucus carota HOM05D007653 ORTHO05D009670 8.6e-26 121.7 260 37.7
Oeu057628.1 Olea europaea HOM05D007653 ORTHO05D009670 8.6e-26 121.7 281 36.3
FAN05G3332 Fragaria x ananassa HOM05D007653 ORTHO05D009670 1.1e-25 121.3 280 34.6
Phvul.010G060900 Phaseolus vulgaris HOM05D007653 ORTHO05D009670 1.5e-25 120.9 290 34.1
Prupe.6G282500 Prunus persica HOM05D007653 ORTHO05D009670 9.5e-25 118.2 267 34.1
MD04G1163000 Malus domestica HOM05D007653 ORTHO05D009670 1.2e-24 117.9 269 33.8
Sed0001003 Sechium edule HOM05D007653 ORTHO05D009670 2.1e-24 117.1 296 33.1
QL07p034260 Quercus lobata HOM05D007653 ORTHO05D009670 3.6e-24 116.3 265 34.0
TAR369G0435 Trochodendron aralioides HOM05D007653 ORTHO05D009670 3.6e-24 116.3 278 35.3
Cfa017149 Carpinus fangiana HOM05D007653 ORTHO05D009670 6.2e-24 115.5 278 34.2
Ciclev10012426m.g Citrus clementina HOM05D007653 ORTHO05D009670 1.1e-23 114.8 284 32.0
Actinidia20753 Actinidia chinensis HOM05D007653 ORTHO05D009670 1.8e-23 114.0 278 32.7
CsaV3_4G026460 Cucumis sativus L. HOM05D007653 ORTHO05D009670 1.8e-23 114.0 272 33.5
Potri.016G123700 Populus trichocarpa HOM05D007653 ORTHO05D009670 3.1e-23 113.2 277 36.8
FAN14G3858 Fragaria x ananassa HOM05D001497 ORTHO05D001619 5.2e-23 112.5 274 35.0
MELO3C026011.2 Cucumis melo HOM05D007653 ORTHO05D009670 1.2e-22 111.3 272 34.6
Manes.09G109500 Manihot esculenta HOM05D007653 ORTHO05D009670 1.2e-22 111.3 275 32.7
TWI74G0740 Tripterygium wilfordii HOM05D007653 ORTHO05D009670 2.0e-22 110.5 258 33.7
Lalb_Chr12g0207101 Lupinus albus HOM05D007653 ORTHO05D009670 2.6e-22 110.2 292 32.9
Atru.chr8.2298 Acer truncatum HOM05D007653 ORTHO05D009670 3.4e-22 109.8 279 36.9
VMungo1383G1231 Vigna mungo HOM05D007653 ORTHO05D009670 5.8e-22 109.0 268 34.0
ClCG04G006820 Citrullus lanatus HOM05D007653 ORTHO05D009670 1.7e-21 107.5 273 32.6
Medtr4g014670 Medicago truncatula HOM05D007653 ORTHO05D009670 3.8e-21 106.3 293 35.8
Sabra16G0118500 Salix brachista HOM05D007653 ORTHO05D009670 2.4e-20 103.6 258 35.3
Medtr7g069710 Medicago truncatula HOM05D007653 ORTHO05D009670 4.2e-20 102.8 278 32.4
TPR.G5265 Trifolium pratense HOM05D007653 ORTHO05D009670 5.4e-20 102.4 294 34.0
Aqoxy2G00810 Aquilegia oxysepala HOM05D007653 ORTHO05D009670 9.2e-20 101.7 278 34.2
Glyma.07G154000 Glycine max HOM05D007653 ORTHO05D009670 9.2e-20 101.7 276 33.7
TPR.G21326 Trifolium pratense HOM05D007653 ORTHO05D009670 9.2e-20 101.7 291 33.7
Migut.L02038 Erythranthe guttata HOM05D007653 ORTHO05D009670 4.6e-19 99.4 263 31.9
CiPaw.10G159500 Carya illinoinensis HOM05D007653 ORTHO05D009670 7.8e-19 98.6 275 30.5
Cc06_g00860 Coffea canephora HOM05D007653 ORTHO05D009670 3.0e-18 96.7 308 30.8
Ca_07676_v3 Cicer arietinum L. HOM05D007653 ORTHO05D009670 9.6e-17 91.7 283 31.4
Rhsim04G0175600 Rhododendron simsii HOM05D007653 ORTHO05D009670 1.2e-16 91.3 255 31.4
ECA247G1536 Erigeron canadensis HOM05D007653 ORTHO05D009670 4.7e-16 89.4 268 33.6
Lsat_1_v5_gn_9_37441 Lactuca sativa HOM05D007653 ORTHO05D009670 4.7e-16 89.4 270 34.1
Actinidia32531 Actinidia chinensis HOM05D007653 ORTHO05D009670 6.2e-16 89.0 278 30.2
Psat7g247360 Pisum sativum HOM05D007653 ORTHO05D009670 5.3e-15 85.9 302 32.1
Phvul.008G094700 Phaseolus vulgaris HOM05D001497 ORTHO05D001707 6.9e-15 85.5 266 31.6
Solyc09g005020.1 Solanum lycopersicum HOM05D007653 ORTHO05D009670 1.2e-14 84.7 272 31.6
PSO339G6297 Papaver somniferum HOM05D007653 ORTHO05D009670 1.5e-14 84.3 277 30.0
arahy.Tifrunner.gnm1.ann1.4LI2NJ Arachis hypogaea HOM05D007653 ORTHO05D009670 2.6e-14 83.6 293 29.0
Cc06_g00970 Coffea canephora HOM05D001108 ORTHO05D001619 4.4e-14 82.8 211 34.1
Eucgr.K00125 Eucalyptus grandis HOM05D007653 ORTHO05D009670 5.8e-14 82.4 279 28.7
Cpa.g.sc120.35 Carica papaya HOM05D007653 ORTHO05D009670 2.9e-13 80.1 271 31.7
BcaB01g00481 Brassica carinata HOM05D007653 ORTHO05D009670 1.1e-12 78.2 265 29.4
C08p26990 Brassica napus HOM05D007653 ORTHO05D009670 1.1e-12 78.2 265 29.4
BolC8t50316H Brassica oleracea HOM05D007653 ORTHO05D009670 1.1e-12 78.2 265 29.4
SGA_v2.0_scaffold110G31197 Striga asiatica HOM05D007653 ORTHO05D009670 1.1e-12 78.2 257 28.0
A09p44930 Brassica napus HOM05D007653 ORTHO05D009670 1.4e-12 77.8 265 29.8
BraA09t39952Z Brassica rapa HOM05D007653 ORTHO05D009670 1.4e-12 77.8 265 29.8
Thhalv10010652m.g Eutrema salsugineum HOM05D007653 ORTHO05D009670 1.4e-12 77.8 266 28.6
Ca_20332_v3 Cicer arietinum L. HOM05D007653 ORTHO05D009670 1.9e-12 77.4 262 34.4
CAN.G588.49 Capsicum annuum HOM05D007653 ORTHO05D009670 2.4e-12 77.0 271 30.3
PGSC0003DMG400026639 Solanum tuberosum HOM05D007653 ORTHO05D009670 4.2e-12 76.3 289 30.4
BcaB01g00421 Brassica carinata HOM05D007653 ORTHO05D009670 5.4e-12 75.9 267 30.3
Nitab4.5_0009553g0030 Nicotiana tabacum HOM05D007653 ORTHO05D009670 7.1e-12 75.5 257 34.6
Nn2g10953 Nelumbo nucifera HOM05D007653 ORTHO05D009670 1.2e-11 74.7 286 31.1
FAN02G3974 Fragaria x ananassa HOM05D007653 ORTHO05D009670 1.6e-11 74.3 88 44.3
Lalb_Chr01g0023261 Lupinus albus HOM05D007653 ORTHO05D009670 2.1e-11 73.9 306 29.4
AL5G32220 Arabidopsis lyrata HOM05D007653 ORTHO05D009670 2.7e-11 73.6 285 28.4
FAN09G3847 Fragaria x ananassa HOM05D007653 ORTHO05D009670 2.7e-11 73.6 128 39.1
AT3G51760 Arabidopsis thaliana HOM05D007653 ORTHO05D009670 3.5e-11 73.2 287 27.5
Haze_21051 Corylus avellana HOM05D007653 ORTHO05D009670 4.6e-11 72.8 90 47.8
Sp5g10510 Schrenkiella parvula HOM05D007653 ORTHO05D009670 1.7e-10 70.9 266 28.6
CARHR161390 Cardamine hirsuta HOM05D007653 ORTHO05D009670 2.3e-10 70.5 267 28.8
Aa31sc892G20 Aethionema arabicum HOM05D007653 ORTHO05D009670 5.1e-10 69.3 257 27.6
Peaxi162Scf01132g00319 Petunia axillaris HOM05D007653 ORTHO05D009670 6.6e-10 68.9 252 29.8


User provided reference genes

Program Settings