Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 1.9e-124 449.1 220 100.0
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 7.7e-57 224.6 213 54.5
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 2.5e-55 219.5 213 54.5
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 2.1e-54 216.5 215 56.3
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 2.3e-53 213.0 215 53.0
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 8.8e-53 211.1 217 53.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.4e-52 208.8 213 53.5
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 4.8e-51 205.3 219 52.1
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 8.2e-51 204.5 213 53.1
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.8e-50 203.4 217 52.1
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 7.0e-50 201.4 206 52.4
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 9.1e-50 201.1 217 50.7
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.0e-49 199.9 230 51.3
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.5e-49 199.1 214 52.3
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 5.9e-49 198.4 213 52.1
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.2e-48 196.4 214 50.9
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 2.9e-48 196.1 223 48.9
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.1e-47 194.1 218 49.1
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.5e-47 193.7 213 50.2
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.5e-47 193.7 222 51.4
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.9e-47 193.4 218 50.0
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.9e-47 193.4 233 47.2
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 7.2e-47 191.4 218 49.1
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 7.2e-47 191.4 225 48.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.4e-47 191.0 222 50.0
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 9.4e-47 191.0 222 50.0
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 9.4e-47 191.0 229 45.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.2e-46 190.7 215 51.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.6e-46 189.1 208 51.0
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 4.7e-46 188.7 215 48.8
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 4.7e-46 188.7 210 50.5
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.0e-45 187.6 128 65.6
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.0e-45 187.6 218 50.9
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.8e-45 186.8 218 48.6
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.3e-45 186.4 216 47.7
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 5.2e-45 185.3 218 48.6
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.2e-45 185.3 215 50.2
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 5.2e-45 185.3 233 48.1
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.5e-44 183.7 219 47.9
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.0e-44 183.3 216 46.3
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 4.4e-44 182.2 209 48.3
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 9.7e-44 181.0 218 49.1
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.8e-43 179.5 126 61.9
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.4e-42 177.2 207 47.3
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.8e-42 176.8 214 47.2
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 2.4e-42 176.4 217 46.5
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 7.0e-42 174.9 123 63.4
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.2e-41 174.1 211 47.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.6e-41 173.7 215 45.6
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.0e-41 173.3 219 42.9
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.7e-41 172.9 216 47.2
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 3.5e-41 172.6 223 46.2
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 4.5e-41 172.2 218 44.5
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 4.5e-41 172.2 215 45.6
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 5.9e-41 171.8 121 62.8
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 5.9e-41 171.8 222 44.1
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 7.7e-41 171.4 206 48.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-40 170.6 158 54.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 1.3e-40 170.6 216 46.3
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.7e-40 170.2 218 47.7
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.7e-40 170.2 222 44.1
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-40 170.2 215 45.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.9e-40 169.5 215 45.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.9e-40 169.5 223 45.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.9e-40 169.5 223 45.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 6.5e-40 168.3 145 51.7
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-39 167.5 215 45.6
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.5e-39 167.2 167 51.5
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 1.5e-39 167.2 221 43.9
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.5e-39 167.2 213 43.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.9e-39 166.8 213 42.7
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 1.9e-39 166.8 213 46.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 1.9e-39 166.8 215 45.6
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.2e-39 166.0 220 44.1
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.2e-39 165.6 213 42.3
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 5.5e-39 165.2 215 42.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 5.5e-39 165.2 209 44.5
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 5.5e-39 165.2 212 47.2
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 9.4e-39 164.5 141 53.2
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.1e-38 163.3 203 42.9
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.1e-38 163.3 124 58.9
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.1e-38 163.3 206 46.1
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.6e-38 162.5 220 43.2
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 3.6e-38 162.5 212 44.8
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.0e-37 161.0 144 54.2
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.4e-37 160.6 213 43.7
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.4e-37 160.6 210 43.8
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 1.4e-37 160.6 109 63.3
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 2.3e-37 159.8 218 43.6
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 3.0e-37 159.5 113 61.9
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 5.2e-37 158.7 213 44.1
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 5.2e-37 158.7 124 55.6
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 5.2e-37 158.7 109 61.5
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.8e-37 157.9 213 46.9
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.2e-36 157.5 214 42.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 1.2e-36 157.5 119 60.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-36 156.8 120 56.7
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.6e-36 156.4 218 43.6
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.6e-36 156.4 213 43.7
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 3.4e-36 156.0 122 54.1
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 3.4e-36 156.0 206 41.7
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 3.4e-36 156.0 204 40.7
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.4e-36 156.0 212 45.3
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 4.4e-36 155.6 113 57.5
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 4.4e-36 155.6 219 44.3
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 4.4e-36 155.6 214 45.3
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 9.8e-36 154.5 214 40.7
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.3e-35 154.1 189 42.9
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.3e-35 154.1 217 43.8
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.8e-35 152.9 221 41.6
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 2.8e-35 152.9 205 42.9
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.8e-35 152.9 212 45.3
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 2.8e-35 152.9 213 43.7
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.7e-35 152.5 113 59.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 3.7e-35 152.5 204 38.7
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 4.8e-35 152.1 141 51.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.8e-35 152.1 212 44.8
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 6.3e-35 151.8 122 55.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 8.3e-35 151.4 214 43.9
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.4e-34 150.6 222 41.0
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 1.8e-34 150.2 204 38.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.1e-34 149.4 209 41.6
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 4.1e-34 149.1 217 40.1
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 9.1e-34 147.9 114 59.6
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.6e-33 147.1 180 42.8
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.0e-33 146.7 204 42.6
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.9e-32 142.9 204 37.7
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 2.9e-32 142.9 204 37.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 1.1e-31 141.0 120 52.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 1.1e-31 141.0 120 52.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.2e-31 139.4 206 39.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.5e-31 138.7 227 35.7
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.5e-31 137.9 153 47.1
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.6e-30 137.1 112 54.5
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.6e-30 137.1 112 56.2
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.6e-30 136.0 243 38.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.7e-30 135.6 240 38.8
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.7e-30 135.6 240 38.8
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.0e-30 134.8 256 35.9
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.3e-29 133.3 180 38.9
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 2.3e-29 133.3 180 38.9
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 5.2e-29 132.1 121 53.7
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 1.2e-28 131.0 212 34.9
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.3e-27 127.5 210 41.4
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.8e-27 126.3 112 50.0
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 3.7e-27 125.9 209 39.2
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.1e-26 124.4 163 49.7
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.1e-26 124.4 85 61.2
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 5.4e-26 122.1 205 38.0
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 5.9e-25 118.6 96 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 5.0e-24 115.5 112 49.1
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 5.0e-24 115.5 96 57.3
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 1.1e-23 114.4 194 38.1
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 1.9e-23 113.6 111 49.5
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.3e-23 112.8 177 37.3
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.8e-22 109.8 102 51.0
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.0e-21 107.8 92 51.1
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.0e-21 106.3 110 49.1
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 4.4e-20 102.4 105 44.8
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 9.8e-20 101.3 154 42.2
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 2.7e-17 93.2 132 40.2
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.5e-17 92.8 132 40.2
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 8.9e-13 78.2 115 38.3
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.6e-12 76.6 89 42.7
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.7e-11 72.8 66 47.0
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 2.4e-10 70.1 60 51.7
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 5.4e-10 68.9 128 31.2
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 4.6e-09 65.9 56 51.8
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 3.0e-08 63.2 156 32.7
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.1e-07 61.2 39 64.1
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 2.5e-07 60.1 57 49.1
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 5.6e-07 58.9 48 50.0
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.6e-07 58.9 137 36.5


User provided reference genes

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