Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 2.8e-140 501.9 244 100.0
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 1.3e-49 200.7 221 51.1
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 6.5e-49 198.4 175 54.9
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 9.4e-48 194.5 191 51.3
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 2.1e-47 193.4 185 51.4
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 5.2e-46 188.7 208 51.9
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.5e-45 187.2 147 60.5
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 1.5e-45 187.2 147 60.5
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 9.8e-45 184.5 203 50.2
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 2.8e-44 183.0 167 52.7
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 3.7e-44 182.6 147 57.1
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 5.4e-43 178.7 187 50.8
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 5.4e-43 178.7 210 46.2
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 9.1e-43 177.9 145 57.9
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 1.6e-42 177.2 159 50.9
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 2.0e-42 176.8 146 55.5
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 2.0e-42 176.8 138 55.8
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 3.5e-42 176.0 194 46.4
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 5.9e-42 175.3 189 47.1
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 1.7e-41 173.7 171 52.0
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 2.3e-41 173.3 165 50.9
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 2.9e-41 172.9 209 45.9
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 2.9e-41 172.9 147 55.1
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 3.8e-41 172.6 177 50.3
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 3.8e-41 172.6 181 46.4
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 5.0e-41 172.2 150 53.3
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 5.0e-41 172.2 194 44.8
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 6.6e-41 171.8 150 53.3
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 6.6e-41 171.8 229 44.1
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 1.9e-40 170.2 146 54.8
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 2.5e-40 169.9 203 42.9
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 2.5e-40 169.9 229 44.1
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 2.5e-40 169.9 148 52.0
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 3.3e-40 169.5 203 42.9
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 4.2e-40 169.1 166 50.0
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 1.2e-39 167.5 156 51.9
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 1.2e-39 167.5 152 53.3
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 1.2e-39 167.5 155 51.0
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 1.6e-39 167.2 149 52.3
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 2.1e-39 166.8 225 40.9
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 3.6e-39 166.0 146 53.4
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 8.0e-39 164.9 168 46.4
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.4e-38 164.1 165 47.9
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 1.8e-38 163.7 168 46.4
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 5.2e-38 162.2 151 50.3
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 5.2e-38 162.2 192 43.8
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 7.5e-37 158.3 176 43.2
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 9.8e-37 157.9 179 44.7
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 1.3e-36 157.5 166 45.8
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 6.3e-36 155.2 151 49.7
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 6.3e-36 155.2 131 48.9
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 1.1e-35 154.5 146 47.9
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 1.8e-35 153.7 161 44.7
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 1.8e-35 153.7 167 46.1
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 3.1e-35 152.9 127 51.2
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 5.4e-35 152.1 185 43.8
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 7.0e-35 151.8 181 43.1
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 1.2e-34 151.0 181 42.5
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 1.6e-34 150.6 148 48.0
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 5.9e-34 148.7 195 41.0
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 7.8e-34 148.3 182 42.3
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 1.7e-33 147.1 148 45.3
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 2.3e-33 146.7 191 39.3
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 2.9e-33 146.4 177 43.5
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 8.6e-33 144.8 130 50.0
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.6e-31 140.6 176 42.0
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.8e-31 139.8 180 41.7
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 4.7e-31 139.0 164 43.3
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.7e-31 139.0 164 43.3
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 1.0e-30 137.9 112 54.5
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 2.3e-30 136.7 183 42.6
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 3.1e-30 136.3 158 42.4
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 4.0e-30 136.0 284 31.7
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 5.2e-30 135.6 192 35.9
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 5.2e-30 135.6 180 41.1
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 6.8e-30 135.2 114 54.4
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 1.2e-29 134.4 114 53.5
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 1.5e-29 134.0 125 47.2
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 2.6e-29 133.3 192 35.4
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 2.6e-29 133.3 184 39.1
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 3.4e-29 132.9 180 36.7
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 3.4e-29 132.9 206 39.8
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.3e-28 131.0 113 52.2
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 2.2e-28 130.2 181 36.5
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 2.9e-28 129.8 162 39.5
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 4.9e-28 129.0 221 36.2
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 6.4e-28 128.6 111 50.5
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 1.9e-27 127.1 124 49.2
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 4.1e-27 125.9 149 38.9
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 7.0e-27 125.2 182 40.7
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 9.2e-27 124.8 134 41.8
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 6.0e-26 122.1 158 39.9
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 1.7e-25 120.6 94 53.2
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 3.1e-22 109.8 82 56.1
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.2e-21 107.8 141 40.4
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 1.1e-19 101.3 94 50.0
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 1.9e-19 100.5 69 60.9
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 3.2e-19 99.8 143 39.2
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 1.3e-17 94.4 191 32.5
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 5.1e-17 92.4 79 50.6
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 4.1e-11 72.8 74 48.6
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 4.1e-11 72.8 155 29.7
Pp3c16_16690 Physcomitrium patens HOM05D007171 ORTHO05D008946 5.1e-09 65.9 129 27.1
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 1.6e-07 60.8 140 27.1
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 4.7e-07 59.3 74 48.6


User provided reference genes

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