Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 4.1e-78 294.7 150 100.0
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 1.1e-49 200.3 149 67.8
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 2.4e-49 199.1 152 69.1
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.0e-40 169.5 147 63.9
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 5.8e-40 167.9 152 61.2
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.7e-39 166.4 153 60.1
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 2.9e-39 165.6 147 59.2
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 4.9e-39 164.9 149 63.1
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 4.9e-39 164.9 153 60.1
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 6.4e-39 164.5 150 62.0
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 4.2e-38 161.8 150 60.7
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 4.2e-38 161.8 153 60.8
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 5.4e-38 161.4 150 62.0
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 2.1e-37 159.5 148 60.8
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 2.1e-37 159.5 149 61.1
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 2.7e-37 159.1 145 61.4
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 2.7e-37 159.1 152 62.5
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 2.7e-37 159.1 147 59.2
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 3.5e-37 158.7 149 59.1
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 6.0e-37 157.9 153 59.5
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 6.0e-37 157.9 146 58.2
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 7.9e-37 157.5 145 57.9
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 1.0e-36 157.1 151 65.6
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.3e-36 156.8 147 56.5
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 3.0e-36 155.6 149 59.1
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 6.7e-36 154.5 147 56.5
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 1.1e-35 153.7 146 56.2
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 1.5e-35 153.3 144 58.3
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.5e-35 153.3 150 56.7
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 1.9e-35 152.9 156 58.3
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 3.3e-35 152.1 144 57.6
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 3.3e-35 152.1 153 58.8
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.3e-35 152.1 150 56.7
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 9.6e-35 150.6 147 56.5
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.3e-34 150.2 145 58.6
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.3e-34 150.2 145 57.9
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 1.6e-34 149.8 145 57.9
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 4.8e-34 148.3 145 57.9
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 4.8e-34 148.3 145 57.9
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.8e-34 148.3 106 66.0
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 6.2e-34 147.9 144 56.9
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 6.2e-34 147.9 147 55.8
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-33 147.1 150 56.7
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 1.4e-33 146.7 141 58.9
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.4e-33 146.7 147 55.1
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.8e-33 146.4 144 55.6
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 2.4e-33 146.0 147 55.1
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.0e-33 145.2 147 55.8
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 4.0e-33 145.2 145 53.1
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 6.9e-33 144.4 147 57.1
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 6.9e-33 144.4 154 54.5
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 6.9e-33 144.4 154 54.5
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 6.9e-33 144.4 160 51.9
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.2e-32 143.7 147 57.1
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.2e-32 143.7 150 55.3
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 2.6e-32 142.5 148 56.8
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.6e-32 142.5 146 55.5
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 3.4e-32 142.1 147 56.5
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 3.4e-32 142.1 146 56.2
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 3.4e-32 142.1 147 56.5
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 3.4e-32 142.1 137 57.7
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 5.8e-32 141.4 147 55.1
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 5.8e-32 141.4 133 56.4
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 5.8e-32 141.4 151 57.0
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 9.9e-32 140.6 147 54.4
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 9.9e-32 140.6 147 54.4
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 1.7e-31 139.8 150 56.7
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.2e-31 139.4 151 55.6
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 3.8e-31 138.7 145 58.6
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.1e-30 137.1 151 55.0
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 1.4e-30 136.7 153 54.9
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.4e-30 136.7 147 51.0
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.2e-30 135.6 146 54.1
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 7.1e-30 134.4 144 52.8
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 1.2e-29 133.7 149 53.7
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.2e-29 133.7 146 50.7
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 2.1e-29 132.9 151 56.3
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 6.0e-29 131.3 134 55.2
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 6.0e-29 131.3 152 54.6
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 3.9e-28 128.6 141 56.0
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 6.7e-28 127.9 159 49.7
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.1e-27 127.1 124 62.9
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 1.5e-27 126.7 107 57.9
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.9e-27 126.3 146 52.1
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 2.5e-27 125.9 153 54.2
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 2.5e-27 125.9 150 49.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 3.3e-27 125.6 133 54.1
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 3.3e-27 125.6 147 47.6
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 4.3e-27 125.2 147 54.4
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 4.3e-27 125.2 150 53.3
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 5.6e-27 124.8 125 55.2
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 5.6e-27 124.8 136 53.7
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 7.4e-27 124.4 138 53.6
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 2.8e-26 122.5 133 55.6
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 4.8e-26 121.7 140 52.9
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 4.8e-26 121.7 150 50.7
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.2e-24 117.1 153 51.6
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 1.5e-24 116.7 146 50.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.5e-24 116.7 111 53.2
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 5.8e-24 114.8 151 51.0
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.8e-24 114.8 151 47.0
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.8e-24 114.8 151 47.0
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 2.9e-23 112.5 146 48.6
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 6.5e-23 111.3 146 50.0
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 6.5e-23 111.3 142 50.0
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 8.4e-23 110.9 131 47.3
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.4e-22 110.2 118 50.8
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.9e-22 109.8 119 57.1
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 9.3e-22 107.5 138 45.7
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.2e-21 107.1 131 49.6
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 2.1e-21 106.3 148 45.3
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 8.7e-20 100.9 146 43.2
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.8e-17 93.2 87 59.8
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 1.3e-15 87.0 88 59.1
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 2.2e-15 86.3 101 53.5
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.1e-14 84.0 101 53.5
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 1.1e-14 84.0 101 53.5
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 1.1e-14 84.0 101 53.5
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.1e-14 84.0 83 61.4
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 1.1e-14 84.0 83 61.4
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 2.5e-14 82.8 85 50.6
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 1.2e-13 80.5 108 50.0
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 1.5e-08 63.5 113 38.9
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 4.5e-08 62.0 111 40.5


User provided reference genes

Program Settings