Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 0.0e+00 1433.7 740 100.0
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 0.0e+00 1094.7 736 75.8
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 0.0e+00 1093.6 736 75.8
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 0.0e+00 1088.6 736 74.6
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 0.0e+00 1082.8 736 74.3
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 0.0e+00 1080.9 727 76.5
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.0e-311 1072.0 729 74.5
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 4.6e-311 1070.8 736 75.3
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 4.6e-311 1070.8 736 73.5
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 2.9e-310 1068.1 736 74.0
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 3.8e-310 1067.8 742 73.3
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 2.5e-309 1065.1 736 74.2
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 3.2e-309 1064.7 736 74.2
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 1.6e-308 1062.4 729 73.7
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 3.0e-307 1058.1 735 73.2
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 5.2e-307 1057.4 740 72.7
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 5.2e-307 1057.4 736 73.9
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 7.5e-306 1053.5 735 73.9
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 7.5e-306 1053.5 735 73.2
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 9.8e-306 1053.1 735 73.6
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 1.3e-305 1052.7 736 73.0
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 4.8e-305 1050.8 735 72.8
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 6.3e-305 1050.4 735 72.8
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 1.4e-304 1049.3 735 73.5
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.4e-304 1049.3 736 73.4
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 2.0e-303 1045.4 736 73.4
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 2.7e-303 1045.0 713 74.2
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 2.9e-302 1041.6 736 72.3
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 8.5e-302 1040.0 736 72.1
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 8.5e-302 1040.0 736 72.6
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 8.5e-302 1040.0 735 73.1
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 7.2e-301 1036.9 729 73.1
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 5.2e-299 1030.8 736 71.5
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 1.2e-298 1029.6 735 72.5
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 5.7e-298 1027.3 736 71.9
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 7.5e-298 1026.9 735 72.0
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 9.8e-298 1026.5 738 71.7
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 7.0e-296 1020.4 735 70.7
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 7.0e-296 1020.4 735 70.7
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 2.0e-295 1018.8 736 70.5
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 2.7e-295 1018.5 730 70.8
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 3.5e-295 1018.1 735 71.4
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 5.9e-295 1017.3 736 70.7
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 5.9e-295 1017.3 735 71.3
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 1.0e-294 1016.5 735 71.0
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 3.8e-294 1014.6 736 70.8
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 5.0e-294 1014.2 735 70.9
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 6.6e-294 1013.8 739 69.8
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.9e-293 1012.3 738 70.6
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 2.5e-293 1011.9 736 71.2
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 1.2e-292 1009.6 736 70.4
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 2.1e-292 1008.8 736 70.2
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 2.1e-292 1008.8 735 70.2
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 1.8e-291 1005.7 737 69.7
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 3.0e-291 1005.0 736 70.4
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 6.8e-291 1003.8 736 70.7
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 8.9e-291 1003.4 734 70.0
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.0e-290 1002.3 713 73.5
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 1.3e-289 999.6 734 70.2
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 1.4e-288 996.1 733 70.1
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.2e-287 993.0 736 70.7
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 5.9e-287 990.7 688 72.5
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 5.0e-286 987.6 735 69.9
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 6.6e-286 987.3 735 69.9
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 1.1e-285 986.5 738 69.4
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 5.6e-285 984.2 738 69.2
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 1.6e-284 982.6 736 69.0
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.8e-284 981.9 744 69.2
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 6.2e-284 980.7 738 69.2
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 8.0e-284 980.3 737 69.5
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 8.0e-284 980.3 737 69.5
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 1.0e-283 979.9 736 68.9
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 1.4e-283 979.5 738 69.1
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.8e-283 979.2 736 67.8
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.1e-283 978.4 746 69.0
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 8.9e-283 976.9 737 69.2
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 8.9e-283 976.9 737 69.1
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 8.9e-283 976.9 741 66.7
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.5e-282 976.1 738 69.0
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 4.4e-282 974.5 737 68.9
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 7.5e-282 973.8 739 68.7
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 9.8e-282 973.4 812 64.9
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 2.2e-281 972.2 738 69.1
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 6.4e-281 970.7 731 68.5
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 6.4e-281 970.7 749 67.6
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 1.4e-280 969.5 731 68.5
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 1.9e-280 969.1 738 68.8
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 2.4e-280 968.8 739 68.2
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 2.7e-279 965.3 733 68.8
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 3.5e-279 964.9 737 68.5
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 8.6e-278 960.3 737 68.1
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 1.2e-276 956.4 737 68.4
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 1.1e-275 953.4 737 68.0
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.1e-275 953.4 735 67.6
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 2.9e-273 945.3 737 67.4
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 1.1e-272 943.3 738 67.5
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 1.1e-272 943.3 744 67.6
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 1.3e-270 936.4 731 67.3
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 2.5e-269 932.2 731 67.0
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 4.1e-264 914.8 736 64.7
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 2.1e-263 912.5 681 69.9
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 6.0e-263 911.0 743 63.9
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 1.7e-262 909.4 649 71.2
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 3.3e-261 905.2 634 74.0
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 1.6e-255 886.3 594 75.9
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 6.9e-251 870.9 736 63.2
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 2.0e-250 869.4 718 64.9
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 3.8e-249 865.1 730 60.3
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 3.3e-245 852.0 741 59.8
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 4.5e-242 841.6 571 75.1
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.2e-241 839.3 562 76.2
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.1e-239 832.8 650 67.2
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 1.1e-235 820.5 740 58.6
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 3.4e-234 815.5 734 60.9
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.2e-233 812.8 764 61.0
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 3.2e-232 808.9 736 58.3
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.1e-227 793.9 775 59.4
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 2.4e-227 792.7 731 59.4
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.1e-219 765.4 727 60.2
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.4e-216 756.9 731 54.7
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 1.5e-210 736.9 737 53.5
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.6e-202 710.3 559 64.2
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 3.6e-199 699.1 490 73.7
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 6.1e-199 698.4 751 50.3
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 3.3e-197 692.6 745 51.7
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 4.7e-191 672.2 735 53.7
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 4.7e-191 672.2 743 49.5
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 1.0e-182 644.4 746 48.7
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 6.2e-167 592.0 439 67.2
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 3.3e-136 490.0 540 54.4
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 4.3e-128 463.0 348 65.2
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 1.2e-122 444.9 443 50.8
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 2.6e-117 427.2 412 54.9
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 5.7e-112 409.5 433 54.5
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.4e-109 400.2 377 58.6
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 2.6e-101 374.0 284 65.1
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 3.6e-98 363.6 233 83.3
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 1.4e-97 361.7 786 34.1
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 5.1e-97 359.8 460 48.9
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 3.3e-96 357.1 836 32.7
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 1.7e-95 354.8 284 64.8
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 6.3e-95 352.8 228 82.5
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 7.2e-83 312.8 289 56.1
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 1.5e-80 305.1 471 44.4
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.8e-79 300.8 228 66.2
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 1.3e-76 292.0 649 35.0
CSS0043437 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.8e-76 290.4 238 62.6
RcHm_v2.0_Chr2g0173251 Rosa chinensis HOM05D003450 ORTHO05D004150 1.6e-74 285.0 330 49.7
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 4.1e-70 270.4 705 31.2
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 3.0e-65 254.2 265 54.0
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.2e-64 252.3 205 64.4
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.0e-64 251.5 226 58.4
Zm00001eb137620 Zea mays HOM05D003450 ORTHO05D004150 3.3e-59 234.2 178 69.1
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 1.3e-52 212.2 170 68.8
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 2.3e-52 211.5 318 47.5
CAN.G293.1 Capsicum annuum HOM05D003450 ORTHO05D004150 6.6e-52 209.9 210 54.3
Prupe.3G293500 Prunus persica HOM05D003450 ORTHO05D004150 4.1e-46 190.7 134 76.9
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 1.7e-44 185.3 236 44.5
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 2.2e-39 168.3 266 42.9
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 5.4e-38 163.7 240 44.2
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.1e-33 149.4 121 62.0
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.2e-32 146.0 120 60.8
Hund02493 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.2e-31 141.7 86 81.4
EL10Ac5g11312 Beta vulgaris HOM05D003450 ORTHO05D004150 9.3e-30 136.3 81 82.7
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 9.0e-25 119.8 83 67.5
Atru.chr6.2427 Acer truncatum HOM05D003450 ORTHO05D004150 1.6e-21 109.0 93 58.1
arahy.Tifrunner.gnm1.ann1.CAW9WT Arachis hypogaea HOM05D003450 ORTHO05D026894 1.7e-20 105.5 90 66.7
Hma1.2p1_0035F.1_g022380 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.7e-20 105.5 86 60.5
arahy.Tifrunner.gnm1.ann1.F4W2B8 Arachis hypogaea HOM05D003450 ORTHO05D004150 2.3e-20 105.1 91 65.9
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.0e-20 104.8 121 47.1
Zm00001eb128800 Zea mays HOM05D003450 ORTHO05D004150 1.9e-19 102.1 89 57.3
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 4.8e-18 97.4 62 79.0
Aqoxy2G03587 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 1.1e-17 96.3 91 53.8
arahy.Tifrunner.gnm1.ann1.84ZZZT Arachis hypogaea HOM05D003450 ORTHO05D026894 1.4e-14 85.9 76 64.5
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 9.3e-14 83.2 117 41.9
Os09g0135100 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 1.1e-11 76.3 63 60.3
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 1.4e-09 69.3 51 62.7
FvH4_1g06690 Fragaria vesca HOM05D003450 ORTHO05D004150 3.4e-08 64.7 42 76.2
Gohir.A11G236220 Gossypium hirsutum HOM05D003450 ORTHO05D217491 6.5e-07 60.5 62 58.1
CSS0014830 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D112628 1.4e-06 59.3 84 44.0
arahy.Tifrunner.gnm1.ann1.D2JCSM Arachis hypogaea HOM05D003450 ORTHO05D026894 2.5e-06 58.5 58 58.6
CSS0043641 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D110033 2.5e-06 58.5 84 42.9
Lsat_1_v5_gn_9_20240 Lactuca sativa HOM05D000349 ORTHO05D013656 5.5e-06 57.4 50 66.0


User provided reference genes

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