Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0005170 Simmondsia chinensis HOM05D003450 ORTHO05D004150 1.2e-60 236.5 130 100.0
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 3.3e-47 191.8 129 80.6
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 3.3e-47 191.8 128 78.9
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 7.3e-47 190.7 128 78.1
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 1.6e-46 189.5 128 78.9
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 1.6e-46 189.5 128 78.9
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 3.6e-46 188.3 127 78.7
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 6.1e-46 187.6 130 77.7
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 8.0e-46 187.2 128 78.1
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.0e-45 186.8 126 77.8
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 1.8e-45 186.0 127 78.0
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.8e-45 186.0 130 76.9
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 2.3e-45 185.7 127 76.4
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 4.0e-45 184.9 128 77.3
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 4.0e-45 184.9 130 78.5
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 5.2e-45 184.5 127 79.5
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 5.2e-45 184.5 127 79.5
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 5.2e-45 184.5 127 77.2
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 8.9e-45 183.7 128 79.7
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.2e-44 183.3 127 78.7
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 1.2e-44 183.3 129 76.0
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 1.5e-44 183.0 128 76.6
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 1.5e-44 183.0 128 77.3
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 2.0e-44 182.6 128 77.3
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 4.4e-44 181.4 125 76.8
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 7.5e-44 180.6 128 76.6
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 1.3e-43 179.9 131 73.3
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.7e-43 179.5 128 75.8
FAN18G3542 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.7e-43 179.5 128 75.8
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 1.7e-43 179.5 129 73.6
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 1.7e-43 179.5 126 79.4
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 1.7e-43 179.5 126 77.0
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 1.7e-43 179.5 125 76.0
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 2.2e-43 179.1 126 76.2
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 2.2e-43 179.1 128 76.6
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 2.2e-43 179.1 126 76.2
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 2.9e-43 178.7 127 75.6
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 2.9e-43 178.7 127 77.2
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 3.7e-43 178.3 129 75.2
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.9e-43 177.9 128 75.8
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 4.9e-43 177.9 128 75.8
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 6.4e-43 177.6 127 76.4
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 1.1e-42 176.8 128 74.2
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.9e-42 176.0 128 75.8
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.9e-42 176.0 127 74.0
TAR623G1393 Trochodendron aralioides HOM05D003450 ORTHO05D004150 1.9e-42 176.0 125 73.6
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 2.4e-42 175.6 126 73.8
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 2.4e-42 175.6 123 75.6
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 2.4e-42 175.6 127 74.8
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 2.4e-42 175.6 130 72.3
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 2.4e-42 175.6 130 72.3
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 3.2e-42 175.3 130 73.8
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 4.1e-42 174.9 127 74.0
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 5.4e-42 174.5 128 73.4
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 7.0e-42 174.1 127 75.6
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 7.0e-42 174.1 129 72.1
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 7.0e-42 174.1 126 73.0
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 9.2e-42 173.7 132 70.5
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 9.2e-42 173.7 129 72.9
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.2e-41 173.3 118 77.1
CSS0010567 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.6e-41 172.9 127 74.8
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 2.7e-41 172.2 122 74.6
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 3.5e-41 171.8 129 73.6
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 4.6e-41 171.4 129 75.2
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 4.6e-41 171.4 126 73.0
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 7.8e-41 170.6 128 71.1
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 1.3e-40 169.9 130 70.8
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 1.7e-40 169.5 130 70.0
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 3.0e-40 168.7 129 71.3
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 3.0e-40 168.7 122 73.0
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 5.0e-40 167.9 128 70.3
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 5.0e-40 167.9 128 70.3
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 8.6e-40 167.2 127 74.0
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 1.1e-39 166.8 127 71.7
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 1.9e-39 166.0 128 71.1
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 3.3e-39 165.2 125 72.8
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 7.3e-39 164.1 118 73.7
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 9.5e-39 163.7 129 69.0
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.1e-38 162.5 121 71.1
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.6e-38 161.8 127 71.7
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.6e-38 161.8 127 71.7
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 1.8e-37 159.5 124 69.4
Zm00001eb068810 Zea mays HOM05D003450 ORTHO05D004150 3.1e-37 158.7 122 67.2
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 4.0e-37 158.3 127 69.3
Zm00001eb191840 Zea mays HOM05D003450 ORTHO05D004150 4.0e-37 158.3 122 66.4
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 4.0e-37 158.3 120 68.3
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 5.2e-37 157.9 126 69.0
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 6.8e-37 157.5 114 75.4
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 6.8e-37 157.5 130 63.8
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 2.0e-36 156.0 121 69.4
Zm00001eb162870 Zea mays HOM05D003450 ORTHO05D004150 2.0e-36 156.0 122 65.6
Zm00001eb190000 Zea mays HOM05D003450 ORTHO05D004150 2.0e-36 156.0 122 65.6
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 2.6e-36 155.6 122 64.8
Zm00001eb235100 Zea mays HOM05D003450 ORTHO05D004150 3.4e-36 155.2 122 64.8
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 4.4e-36 154.8 127 67.7
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 5.8e-36 154.5 127 67.7
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 7.5e-36 154.1 121 64.5
Zm00001eb170860 Zea mays HOM05D003450 ORTHO05D004150 2.2e-35 152.5 122 64.8
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 6.4e-35 151.0 127 67.7
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 1.9e-34 149.4 129 66.7
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 3.2e-34 148.7 121 69.4
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 7.0e-34 147.5 127 67.7
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 1.6e-33 146.4 114 71.9
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.7e-33 145.6 121 65.3
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 4.6e-33 144.8 126 63.5
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 3.0e-32 142.1 121 64.5
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 5.1e-32 141.4 108 75.9
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 8.6e-32 140.6 130 63.1
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 8.6e-32 140.6 107 74.8
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 1.5e-31 139.8 130 62.3
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 1.9e-31 139.4 101 77.2
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 2.5e-31 139.0 107 75.7
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 3.3e-31 138.7 127 56.7
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 5.6e-31 137.9 128 61.7
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 5.6e-31 137.9 127 62.2
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 1.2e-30 136.7 130 60.0
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 2.1e-30 136.0 128 58.6
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 2.8e-30 135.6 130 60.0
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 4.7e-30 134.8 127 55.1
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 6.2e-30 134.4 130 59.2
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 6.2e-30 134.4 130 59.2
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 1.4e-29 133.3 130 59.2
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 1.4e-29 133.3 130 59.2
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 4.0e-29 131.7 130 57.7
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 8.9e-29 130.6 131 60.3
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.5e-28 129.8 86 77.9
Atru.chr6.2428 Acer truncatum HOM05D003450 ORTHO05D004150 3.4e-28 128.6 91 74.7
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 4.4e-28 128.3 98 74.5
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 7.5e-28 127.5 130 56.9
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 8.3e-27 124.0 89 75.3
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 5.4e-26 121.3 89 73.0
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 4.6e-25 118.2 127 56.7
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 7.8e-25 117.5 120 56.7
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 1.0e-24 117.1 130 53.1
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 8.6e-24 114.0 130 52.3
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 3.6e-22 108.6 107 61.7
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 1.1e-21 107.1 102 60.8
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 1.4e-21 106.7 133 48.9
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 2.4e-21 105.9 104 62.5
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 3.1e-21 105.5 132 48.5
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 4.0e-21 105.1 117 53.8
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 5.2e-21 104.8 130 48.5
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 5.2e-21 104.8 130 48.5
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 2.0e-20 102.8 116 52.6
TPR.G33244 Trifolium pratense HOM05D003450 ORTHO05D004150 1.7e-19 99.8 91 61.5
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 6.0e-17 91.3 72 63.9
Zm00001eb367390 Zea mays HOM05D003450 ORTHO05D004150 3.3e-15 85.5 76 56.6
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 5.3e-13 78.2 65 66.2
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 1.5e-12 76.6 156 35.3
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.4e-12 75.5 76 60.5
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 2.7e-09 65.9 143 37.1
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 1.6e-06 56.6 48 68.8
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 3.6e-06 55.5 51 62.7


User provided reference genes

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