Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003630 Simmondsia chinensis HOM05D005881 ORTHO05D007298 2.1e-42 175.3 86 100.0
Cc02_g34860 Coffea canephora HOM05D005881 ORTHO05D007298 6.5e-36 153.7 82 89.0
Potri.004G227500 Populus trichocarpa HOM05D005881 ORTHO05D007298 1.1e-35 152.9 85 85.9
CiPaw.06G026000 Carya illinoinensis HOM05D005881 ORTHO05D007298 1.9e-35 152.1 85 82.4
Thecc.02G037800 Theobroma cacao HOM05D005881 ORTHO05D007298 3.2e-35 151.4 78 92.3
Manes.10G110680 Manihot esculenta HOM05D005881 ORTHO05D007298 5.5e-35 150.6 82 86.6
Eucgr.K01416 Eucalyptus grandis HOM05D005881 ORTHO05D007298 7.2e-35 150.2 79 87.3
PGR042G2514 Punica granatum HOM05D005881 ORTHO05D007298 7.2e-35 150.2 78 91.0
TAR623G1668 Trochodendron aralioides HOM05D005881 ORTHO05D007298 7.2e-35 150.2 78 91.0
Hma1.2p1_0052F.1_g029890 Hydrangea macrophylla HOM05D005881 ORTHO05D007298 9.4e-35 149.8 81 87.7
Cfa026039 Carpinus fangiana HOM05D005881 ORTHO05D007298 1.2e-34 149.4 78 88.5
Haze_07862 Corylus avellana HOM05D005881 ORTHO05D007298 1.2e-34 149.4 78 88.5
MBI06_g43454_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.2e-34 149.4 82 86.6
Duzib052G1237 Durio zibethinus HOM05D005881 ORTHO05D007298 1.6e-34 149.1 80 88.8
Lsat_1_v5_gn_9_121521 Lactuca sativa HOM05D005881 ORTHO05D007298 2.7e-34 148.3 79 88.6
vmacro19838 Vaccinium macrocarpon HOM05D005881 ORTHO05D007298 2.7e-34 148.3 78 88.5
Oeu010217.3 Olea europaea HOM05D005881 ORTHO05D007298 3.6e-34 147.9 84 82.1
Solyc01g103190.3 Solanum lycopersicum HOM05D005881 ORTHO05D007298 4.7e-34 147.5 78 84.6
Sopen01g045620 Solanum pennellii HOM05D005881 ORTHO05D007298 4.7e-34 147.5 78 84.6
Aqoxy1G00234 Aquilegia oxysepala HOM05D005881 ORTHO05D007298 6.1e-34 147.1 82 85.4
CSS0041173 Camellia sinensis var. sinensis HOM05D005881 ORTHO05D007298 6.1e-34 147.1 75 92.0
Gohir.1Z049413 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.1e-34 147.1 78 89.7
Gohir.1Z049621 Gossypium hirsutum HOM05D005881 ORTHO05D007298 6.1e-34 147.1 78 89.7
CANSAT54G2245 Cannabis sativa HOM05D005881 ORTHO05D007298 8.0e-34 146.7 82 84.1
DCAR_001713 Daucus carota HOM05D005881 ORTHO05D007298 8.0e-34 146.7 82 84.1
Gohir.D10G000200 Gossypium hirsutum HOM05D005881 ORTHO05D007298 8.0e-34 146.7 78 88.5
HanXRQChr17g0543881 Helianthus annuus HOM05D005881 ORTHO05D007298 8.0e-34 146.7 77 88.3
PSO017G1314 Papaver somniferum HOM05D005881 ORTHO05D007298 1.0e-33 146.4 78 88.5
CAN.G855.36 Capsicum annuum HOM05D005881 ORTHO05D007298 1.4e-33 146.0 78 84.6
Ciclev10002996m.g Citrus clementina HOM05D005881 ORTHO05D007298 1.4e-33 146.0 78 85.9
Haze_12831 Corylus avellana HOM05D005881 ORTHO05D007298 1.4e-33 146.0 78 87.2
Gohir.A01G000500 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.4e-33 146.0 79 87.3
MD17G1268300 Malus domestica HOM05D005881 ORTHO05D007298 1.4e-33 146.0 84 82.1
Nn2g11943 Nelumbo nucifera HOM05D005881 ORTHO05D007298 1.4e-33 146.0 78 87.2
Oeu003780.1 Olea europaea HOM05D005881 ORTHO05D007298 1.4e-33 146.0 84 79.8
Prupe.1G582900 Prunus persica HOM05D005881 ORTHO05D007298 1.4e-33 146.0 82 85.4
Migut.O00861 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.8e-33 145.6 85 80.0
Sopen01g045600 Solanum pennellii HOM05D005881 ORTHO05D007298 1.8e-33 145.6 78 83.3
CDE08G1319 Ceratophyllum demersum HOM05D005881 ORTHO05D007298 2.3e-33 145.2 83 83.1
Gorai.002G000700 Gossypium raimondii HOM05D005881 ORTHO05D007298 2.3e-33 145.2 78 88.5
Nitab4.5_0001057g0140 Nicotiana tabacum HOM05D005881 ORTHO05D007298 2.3e-33 145.2 77 84.4
PSO170G3105 Papaver somniferum HOM05D005881 ORTHO05D007298 2.3e-33 145.2 78 87.2
Peaxi162Scf00450g00736 Petunia axillaris HOM05D005881 ORTHO05D007298 2.3e-33 145.2 78 83.3
ECA246G1780 Erigeron canadensis HOM05D005881 ORTHO05D007298 3.0e-33 144.8 79 87.3
MD09G1270200 Malus domestica HOM05D005881 ORTHO05D007298 3.0e-33 144.8 84 81.0
PSO407G0212 Papaver somniferum HOM05D005881 ORTHO05D007298 3.9e-33 144.4 77 87.0
Os02g0560450 Oryza sativa ssp. japonica HOM05D005881 ORTHO05D007298 5.2e-33 144.1 82 81.7
Atru.chr6.354 Acer truncatum HOM05D005881 ORTHO05D007298 6.7e-33 143.7 78 83.3
Migut.N00857 Erythranthe guttata HOM05D005881 ORTHO05D007298 1.1e-32 142.9 85 78.8
TWI79G0203 Tripterygium wilfordii HOM05D005881 ORTHO05D007298 1.1e-32 142.9 86 76.7
arahy.Tifrunner.gnm1.ann1.8HB0N1 Arachis hypogaea HOM05D005881 ORTHO05D007298 1.5e-32 142.5 82 79.3
Manes.07G028000 Manihot esculenta HOM05D005881 ORTHO05D007298 1.5e-32 142.5 81 81.5
Ah.00g001370 Amaranthus hybridus HOM05D005881 ORTHO05D007298 2.0e-32 142.1 80 82.5
AUR62022918 Chenopodium quinoa HOM05D005881 ORTHO05D007298 2.6e-32 141.7 80 82.5
RcHm_v2.0_Chr7g0222581 Rosa chinensis HOM05D005881 ORTHO05D007298 2.6e-32 141.7 82 81.7
Sed0016149 Sechium edule HOM05D005881 ORTHO05D007298 4.4e-32 141.0 77 83.1
arahy.Tifrunner.gnm1.ann1.6Q1IVA Arachis hypogaea HOM05D005881 ORTHO05D007298 5.7e-32 140.6 77 83.1
arahy.Tifrunner.gnm1.ann1.GZL8T6 Arachis hypogaea HOM05D005881 ORTHO05D007298 5.7e-32 140.6 77 83.1
Glyma.11G208400 Glycine max HOM05D005881 ORTHO05D007298 5.7e-32 140.6 80 82.5
Glyma.18G045400 Glycine max HOM05D005881 ORTHO05D007298 5.7e-32 140.6 80 82.5
THA.LOC104812459 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 5.7e-32 140.6 80 80.0
ClCG10G007340 Citrullus lanatus HOM05D005881 ORTHO05D007298 7.4e-32 140.2 77 83.1
Lalb_Chr18g0053871 Lupinus albus HOM05D005881 ORTHO05D007298 7.4e-32 140.2 82 79.3
Lj6g0001713 Lotus japonicus HOM05D005881 ORTHO05D007298 9.7e-32 139.8 82 78.0
Aa31LG6G3200 Aethionema arabicum HOM05D005881 ORTHO05D007298 1.3e-31 139.4 79 81.0
AL7G32920 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.3e-31 139.4 80 83.8
AL3G11760 Arabidopsis lyrata HOM05D005881 ORTHO05D007298 1.7e-31 139.0 80 83.8
AT4G21192 Arabidopsis thaliana HOM05D005881 ORTHO05D007298 1.7e-31 139.0 80 83.8
THA.LOC104812941 Tarenaya hassleriana HOM05D005881 ORTHO05D007298 2.2e-31 138.7 79 79.7
GSVIVG01023198001 Vitis vinifera HOM05D005881 ORTHO05D007298 2.2e-31 138.7 78 80.8
Carub.0007s2023 Capsella rubella HOM05D005881 ORTHO05D007298 2.8e-31 138.3 80 82.5
EL10Ac2g04867 Beta vulgaris HOM05D005881 ORTHO05D007298 3.7e-31 137.9 80 81.2
QL02p102397 Quercus lobata HOM05D005881 ORTHO05D007298 4.8e-31 137.5 78 80.8
arahy.Tifrunner.gnm1.ann1.VTJ29R Arachis hypogaea HOM05D005881 ORTHO05D007298 6.3e-31 137.1 82 79.3
QL02p103034 Quercus lobata HOM05D005881 ORTHO05D007298 6.3e-31 137.1 78 80.8
FvH4_5g29590 Fragaria vesca HOM05D005881 ORTHO05D007298 1.1e-30 136.3 77 80.5
Gohir.1Z049575 Gossypium hirsutum HOM05D005881 ORTHO05D007298 1.1e-30 136.3 78 85.9
Gorai.002G000900 Gossypium raimondii HOM05D005881 ORTHO05D007298 1.1e-30 136.3 78 85.9
CARHR227780 Cardamine hirsuta HOM05D005881 ORTHO05D007298 1.4e-30 136.0 80 80.0
Thhalv10026658m.g Eutrema salsugineum HOM05D005881 ORTHO05D007298 1.4e-30 136.0 80 81.2
Nitab4.5_0002546g0080 Nicotiana tabacum HOM05D005881 ORTHO05D007298 1.4e-30 136.0 92 70.7
BcaC06g30655 Brassica carinata HOM05D005881 ORTHO05D007298 3.1e-30 134.8 80 81.2
C03p83470 Brassica napus HOM05D005881 ORTHO05D007298 3.1e-30 134.8 80 80.0
Sp7g19280 Schrenkiella parvula HOM05D005881 ORTHO05D007298 3.1e-30 134.8 80 80.0
SGA_v2.0_scaffold254G45257 Striga asiatica HOM05D005881 ORTHO05D007298 3.1e-30 134.8 75 81.3
BcaC01g00708 Brassica carinata HOM05D005881 ORTHO05D007298 4.1e-30 134.4 80 80.0
BolC3t20627H Brassica oleracea HOM05D005881 ORTHO05D007298 4.1e-30 134.4 80 80.0
BraA08t33500Z Brassica rapa HOM05D005881 ORTHO05D007298 4.1e-30 134.4 80 80.0
BcaNung00865 Brassica carinata HOM05D005881 ORTHO05D007298 1.2e-29 132.9 80 80.0
A03p52690 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-29 132.9 80 80.0
C07p51120 Brassica napus HOM05D005881 ORTHO05D007298 1.2e-29 132.9 80 80.0
BolC7t45612H Brassica oleracea HOM05D005881 ORTHO05D007298 1.2e-29 132.9 80 80.0
Medtr3g064240 Medicago truncatula HOM05D005881 ORTHO05D007298 1.2e-29 132.9 82 74.4
BraA03t14343Z Brassica rapa HOM05D005881 ORTHO05D007298 1.6e-29 132.5 80 80.0
TPR.G37331 Trifolium pratense HOM05D005881 ORTHO05D007298 1.0e-28 129.8 80 73.8
PGSC0003DMG400024874 Solanum tuberosum HOM05D005881 ORTHO05D007298 2.2e-28 128.6 113 57.5
Gohir.1Z049313 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.0e-28 127.5 78 82.1
FAN18G0030 Fragaria x ananassa HOM05D005881 ORTHO05D007298 1.9e-27 125.6 94 66.0
COL.COLO4_17857 Corchorus olitorius HOM05D005881 ORTHO05D007298 2.1e-26 122.1 68 86.8
Gohir.A01G140426 Gossypium hirsutum HOM05D005881 ORTHO05D007298 3.6e-26 121.3 68 85.3
CsaV3_3G006580 Cucumis sativus L. HOM05D005881 ORTHO05D007298 1.4e-25 119.4 66 84.8
Gohir.1Z049675 Gossypium hirsutum HOM05D005881 ORTHO05D007298 2.3e-25 118.6 58 91.4
unitig_22.g6105 Utricularia gibba HOM05D005881 ORTHO05D007298 3.0e-25 118.2 67 83.6
Zm00001eb244030 Zea mays HOM05D005881 ORTHO05D007298 4.0e-25 117.9 71 77.5
Cfa026049 Carpinus fangiana HOM05D005881 ORTHO05D007298 8.8e-25 116.7 67 82.1
Haze_20435 Corylus avellana HOM05D005881 ORTHO05D007298 8.8e-25 116.7 64 85.9
MBI06_g45555_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 1.2e-24 116.3 69 81.2
Cfa021151 Carpinus fangiana HOM05D005881 ORTHO05D007298 2.0e-24 115.5 64 84.4
Rhsim11G0129900 Rhododendron simsii HOM05D005881 ORTHO05D007298 2.0e-24 115.5 62 87.1
Gohir.1Z049721 Gossypium hirsutum HOM05D005881 ORTHO05D007298 5.7e-24 114.0 69 84.1
Nitab4.5_0001057g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 5.7e-24 114.0 64 81.2
Gorai.011G000600 Gossypium raimondii HOM05D005881 ORTHO05D007298 7.5e-24 113.6 69 82.6
SGA_v2.0_scaffold131G34400 Striga asiatica HOM05D005881 ORTHO05D007298 1.8e-22 109.0 73 68.5
Mapoly0035s0117 Marchantia polymorpha HOM05D005881 ORTHO05D007298 2.4e-22 108.6 74 64.9
Rhsim06G0200500 Rhododendron simsii HOM05D005881 ORTHO05D007298 3.1e-22 108.2 64 81.2
A08p15220 Brassica napus HOM05D005881 ORTHO05D007298 4.1e-22 107.8 73 74.0
AagrBONN_evm.TU.Sc2ySwM_117.2390 Anthoceros agrestis HOM05D005881 ORTHO05D007298 3.5e-21 104.8 77 59.7
Phvul.006G085400 Phaseolus vulgaris HOM05D005881 ORTHO05D007298 4.5e-21 104.4 50 86.0
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 3.8e-20 101.3 62 77.4
EL10Ac4g10162 Beta vulgaris HOM05D002030 ORTHO05D007413 5.0e-20 100.9 50 84.0
Haze_09300 Corylus avellana HOM05D005881 ORTHO05D007298 1.1e-19 99.8 64 78.1
Haze_10676 Corylus avellana HOM05D005881 ORTHO05D007298 1.1e-19 99.8 64 76.6
EL10Ac4g07780 Beta vulgaris HOM05D000065 ORTHO05D002939 1.2e-18 96.3 51 82.4
EL10Ac4g07877 Beta vulgaris HOM05D005881 ORTHO05D007298 1.2e-18 96.3 51 82.4
BcaC02g10665 Brassica carinata HOM05D005881 ORTHO05D007298 2.3e-17 92.0 49 77.6
C04p26430 Brassica napus HOM05D005881 ORTHO05D007298 2.3e-17 92.0 49 77.6
BolC4t24162H Brassica oleracea HOM05D005881 ORTHO05D007298 2.3e-17 92.0 49 77.6
HPP92_009201 Vanilla planifolia HOM05D005881 ORTHO05D007298 8.8e-17 90.1 56 76.8
EL10Ac7g16281 Beta vulgaris HOM05D005881 ORTHO05D007298 5.7e-16 87.4 66 63.6
MBI06_g35042_MAGBIO Magnolia biondii HOM05D005881 ORTHO05D007298 7.7e-13 77.0 60 61.7
EL10Ac4g10126 Beta vulgaris HOM05D002030 ORTHO05D007413 3.3e-11 71.6 38 76.3
MELO3C032219.2 Cucumis melo HOM05D005881 ORTHO05D007298 3.3e-11 71.6 54 66.7
arahy.Tifrunner.gnm1.ann1.0A1TZX Arachis hypogaea HOM05D001400 ORTHO05D016394 3.6e-10 68.2 36 75.0
MCO07G551 Micromonas commoda HOM05D005881 ORTHO05D007298 3.6e-10 68.2 71 42.3
Nitab4.5_0001129g0150 Nicotiana tabacum HOM05D005881 ORTHO05D007298 3.6e-10 68.2 39 87.2
SHI38298 Sapria himalayana HOM05D005881 ORTHO05D000001 9.8e-08 60.1 39 59.0
SalBow5G0226 Salvia bowleyana HOM05D005881 ORTHO05D007298 1.1e-06 56.6 37 67.6


User provided reference genes

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