Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003620 Simmondsia chinensis HOM05D000045 ORTHO05D001346 6.7e-50 200.3 95 100.0
Lj5A281T52 Lonicera japonica HOM05D000045 ORTHO05D001346 4.1e-23 111.3 96 58.3
Hund15409 Selenicereus undatus HOM05D000045 ORTHO05D001346 4.1e-23 111.3 96 61.5
Haze_10008 Corylus avellana HOM05D000045 ORTHO05D001346 9.1e-23 110.2 89 66.3
AUR62017439 Chenopodium quinoa HOM05D000045 ORTHO05D001346 1.2e-22 109.8 94 63.8
Atru.chr6.353 Acer truncatum HOM05D000045 ORTHO05D001346 1.6e-22 109.4 90 64.4
Dinv29667 Davidia involucrata HOM05D000045 ORTHO05D001346 2.0e-22 109.0 89 64.0
AUR62032468 Chenopodium quinoa HOM05D000045 ORTHO05D001346 3.5e-22 108.2 94 62.8
CiPaw.06G176100 Carya illinoinensis HOM05D000045 ORTHO05D001346 5.9e-22 107.5 89 64.0
COL.COLO4_25306 Corchorus olitorius HOM05D000045 ORTHO05D001346 1.0e-21 106.7 96 59.4
MBI06_g32163_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 1.0e-21 106.7 96 59.4
MD09G1270100 Malus domestica HOM05D000045 ORTHO05D001346 1.0e-21 106.7 92 60.9
QL02p102405 Quercus lobata HOM05D000045 ORTHO05D001346 1.0e-21 106.7 89 62.9
QL02p103043 Quercus lobata HOM05D000045 ORTHO05D001346 1.0e-21 106.7 89 62.9
Thecc.09G264500 Theobroma cacao HOM05D000045 ORTHO05D001346 1.7e-21 105.9 96 59.4
Glyma.10G001400 Glycine max HOM05D000045 ORTHO05D001346 2.9e-21 105.1 89 64.0
arahy.Tifrunner.gnm1.ann1.RBX3HB Arachis hypogaea HOM05D000045 ORTHO05D001346 6.5e-21 104.0 89 61.8
arahy.Tifrunner.gnm1.ann1.Z2KB3N Arachis hypogaea HOM05D000045 ORTHO05D001346 6.5e-21 104.0 89 61.8
HanXRQChr10g0294671 Helianthus annuus HOM05D000045 ORTHO05D001346 6.5e-21 104.0 96 56.2
Manes.10G110600 Manihot esculenta HOM05D000045 ORTHO05D001346 6.5e-21 104.0 89 60.7
Potri.004G227600 Populus trichocarpa HOM05D000045 ORTHO05D001346 1.1e-20 103.2 89 61.8
VMungo0540G0739 Vigna mungo HOM05D000045 ORTHO05D001346 1.1e-20 103.2 89 62.9
Ah.02g128360 Amaranthus hybridus HOM05D000045 ORTHO05D001346 1.5e-20 102.8 91 58.2
ECA234G0373 Erigeron canadensis HOM05D000045 ORTHO05D001346 1.5e-20 102.8 96 54.2
Aa31LG1G4680 Aethionema arabicum HOM05D000045 ORTHO05D001346 1.9e-20 102.4 89 61.8
Ciclev10000456m.g Citrus clementina HOM05D000045 ORTHO05D001346 1.9e-20 102.4 89 61.8
Nn4g24595 Nelumbo nucifera HOM05D000045 ORTHO05D001346 1.9e-20 102.4 96 58.3
Phvul.006G220900 Phaseolus vulgaris HOM05D000045 ORTHO05D001346 1.9e-20 102.4 89 61.8
MSTRG.16475 Avicennia marina HOM05D000045 ORTHO05D001346 2.5e-20 102.1 96 56.2
Prupe.1G583000 Prunus persica HOM05D000045 ORTHO05D001346 2.5e-20 102.1 89 60.7
CANSAT01G0267 Cannabis sativa HOM05D000045 ORTHO05D001346 3.2e-20 101.7 89 64.0
Gorai.006G118900 Gossypium raimondii HOM05D000045 ORTHO05D001346 3.2e-20 101.7 96 57.3
Rhsim11G0118700 Rhododendron simsii HOM05D000045 ORTHO05D001346 3.2e-20 101.7 89 61.8
Sabra01G0172600 Salix brachista HOM05D000045 ORTHO05D001346 3.2e-20 101.7 89 60.7
Cpa.g.sc113.2 Carica papaya HOM05D000045 ORTHO05D001346 5.5e-20 100.9 89 60.7
Duzib170G0238 Durio zibethinus HOM05D000045 ORTHO05D001346 5.5e-20 100.9 96 56.2
Gohir.D09G101500 Gossypium hirsutum HOM05D000045 ORTHO05D001346 5.5e-20 100.9 96 57.3
vmacro01687 Vaccinium macrocarpon HOM05D000045 ORTHO05D001346 5.5e-20 100.9 89 60.7
Gohir.A09G104800 Gossypium hirsutum HOM05D000045 ORTHO05D001346 2.1e-19 99.0 96 56.2
Nitab4.5_0001057g0060 Nicotiana tabacum HOM05D000045 ORTHO05D001346 2.1e-19 99.0 89 59.6
Nitab4.5_0001129g0080 Nicotiana tabacum HOM05D000045 ORTHO05D001346 2.1e-19 99.0 89 59.6
RcHm_v2.0_Chr7g0219621 Rosa chinensis HOM05D000045 ORTHO05D001346 2.1e-19 99.0 98 54.1
Solyc01g103180.4 Solanum lycopersicum HOM05D000045 ORTHO05D001346 2.1e-19 99.0 90 60.0
Ca_00024_v3 Cicer arietinum L. HOM05D000045 ORTHO05D001346 6.1e-19 97.4 89 58.4
PSO170G0044 Papaver somniferum HOM05D000045 ORTHO05D001346 6.1e-19 97.4 85 61.2
PGR042G0951 Punica granatum HOM05D000045 ORTHO05D001346 6.1e-19 97.4 89 57.3
CARHR010360 Cardamine hirsuta HOM05D000045 ORTHO05D001346 8.0e-19 97.1 89 58.4
Lj6g0000593 Lotus japonicus HOM05D000045 ORTHO05D001346 8.0e-19 97.1 89 58.4
MELO3C033452.2 Cucumis melo HOM05D000045 ORTHO05D001346 1.8e-18 95.9 89 56.2
CsaV3_5G014020 Cucumis sativus L. HOM05D000045 ORTHO05D001346 1.8e-18 95.9 89 56.2
CsaV3_UNG168310 Cucumis sativus L. HOM05D000045 ORTHO05D001346 1.8e-18 95.9 89 56.2
FvH4_5g27741 Fragaria vesca HOM05D000045 ORTHO05D001346 1.8e-18 95.9 98 52.0
PSO017G3610 Papaver somniferum HOM05D000045 ORTHO05D001346 1.8e-18 95.9 85 61.2
Sp1g08850 Schrenkiella parvula HOM05D000045 ORTHO05D001346 1.8e-18 95.9 89 57.3
Sopen01g045590 Solanum pennellii HOM05D000045 ORTHO05D001346 1.8e-18 95.9 89 59.6
A06p06890 Brassica napus HOM05D000045 ORTHO05D001346 2.3e-18 95.5 89 57.3
C05p08370 Brassica napus HOM05D000045 ORTHO05D001346 2.3e-18 95.5 89 57.3
BolC5t29588H Brassica oleracea HOM05D000045 ORTHO05D001346 2.3e-18 95.5 89 57.3
BraA06t23904Z Brassica rapa HOM05D000045 ORTHO05D001346 2.3e-18 95.5 89 57.3
AL1G20950 Arabidopsis lyrata HOM05D000045 ORTHO05D001346 3.0e-18 95.1 89 57.3
Peaxi162Scf00011g01634 Petunia axillaris HOM05D000045 ORTHO05D001346 3.0e-18 95.1 89 56.2
MELO3C032543.2 Cucumis melo HOM05D000045 ORTHO05D001346 4.0e-18 94.7 87 56.3
Eucgr.G00085 Eucalyptus grandis HOM05D000045 ORTHO05D001346 4.0e-18 94.7 89 58.4
Sed0027343 Sechium edule HOM05D000045 ORTHO05D001346 5.2e-18 94.4 96 52.1
Carub.0001s0965 Capsella rubella HOM05D000045 ORTHO05D001346 6.8e-18 94.0 89 57.3
ClCG11G000450 Citrullus lanatus HOM05D000045 ORTHO05D001346 6.8e-18 94.0 89 55.1
CAN.G855.37 Capsicum annuum HOM05D000045 ORTHO05D001346 1.2e-17 93.2 89 57.3
TWI59G0416 Tripterygium wilfordii HOM05D000045 ORTHO05D001346 2.0e-17 92.4 92 56.5
Thhalv10006984m.g Eutrema salsugineum HOM05D000045 ORTHO05D001346 2.6e-17 92.0 89 55.1
AT1G10240 Arabidopsis thaliana HOM05D000045 ORTHO05D001346 4.4e-17 91.3 89 53.9
CDE02G1527 Ceratophyllum demersum HOM05D000045 ORTHO05D001346 3.7e-16 88.2 85 58.8
Migut.B00731 Erythranthe guttata HOM05D000045 ORTHO05D001346 4.8e-16 87.8 90 56.7
TPR.G2092 Trifolium pratense HOM05D000045 ORTHO05D001346 8.3e-16 87.0 90 55.6
TWI73G0746 Tripterygium wilfordii HOM05D000045 ORTHO05D001346 1.1e-15 86.7 92 54.3
Psat1g223880 Pisum sativum HOM05D000045 ORTHO05D001346 5.4e-15 84.3 89 51.7
Lalb_Chr15g0090851 Lupinus albus HOM05D000045 ORTHO05D001346 4.5e-14 81.3 73 57.5
THA.LOC104816753 Tarenaya hassleriana HOM05D000045 ORTHO05D001346 1.3e-13 79.7 77 55.8
EL10Ac6g14028 Beta vulgaris HOM05D000045 ORTHO05D001346 3.8e-13 78.2 98 49.0
Actinidia00156 Actinidia chinensis HOM05D000045 ORTHO05D001346 9.5e-12 73.6 55 67.3
MBI18_g24953_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 1.3e-08 63.2 66 47.0
Rhsim13G0006600 Rhododendron simsii HOM05D000045 ORTHO05D001346 1.3e-08 63.2 66 50.0
Atru.chr4.2954 Acer truncatum HOM05D000045 ORTHO05D001346 1.7e-08 62.8 59 49.2
HanXRQChr13g0393041 Helianthus annuus HOM05D000045 ORTHO05D001346 1.7e-08 62.8 68 47.1
Glyma.09G039300 Glycine max HOM05D000045 ORTHO05D001346 2.2e-08 62.4 66 48.5
Dinv33097 Davidia involucrata HOM05D000045 ORTHO05D001346 2.8e-08 62.0 66 47.0
arahy.Tifrunner.gnm1.ann1.BDP107 Arachis hypogaea HOM05D000045 ORTHO05D001346 3.7e-08 61.6 66 47.0
arahy.Tifrunner.gnm1.ann1.DC1LDI Arachis hypogaea HOM05D000045 ORTHO05D001346 3.7e-08 61.6 66 47.0
PGR044G0187 Punica granatum HOM05D000045 ORTHO05D001346 3.7e-08 61.6 68 48.5
GSVIVG01035045001 Vitis vinifera HOM05D000045 ORTHO05D001346 3.7e-08 61.6 66 47.0
Ciclev10004395m.g Citrus clementina HOM05D000045 ORTHO05D001346 4.9e-08 61.2 59 50.8
MBI19_g29993_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D001346 4.9e-08 61.2 66 48.5
CSS0044022 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D001346 6.3e-08 60.8 66 47.0
CiPaw.01G142200 Carya illinoinensis HOM05D000045 ORTHO05D001346 6.3e-08 60.8 66 45.5
Lalb_Chr20g0121001 Lupinus albus HOM05D000045 ORTHO05D001346 6.3e-08 60.8 66 47.0
QL06p011313 Quercus lobata HOM05D000045 ORTHO05D001346 6.3e-08 60.8 66 45.5
Lj1C20T10 Lonicera japonica HOM05D000045 ORTHO05D001346 8.3e-08 60.5 66 47.0
Phvul.009G253800 Phaseolus vulgaris HOM05D000045 ORTHO05D001346 8.3e-08 60.5 66 47.0
Lj6g0006221 Lotus japonicus HOM05D000045 ORTHO05D001346 1.4e-07 59.7 59 49.2
TWI53G0848 Tripterygium wilfordii HOM05D000045 ORTHO05D001346 1.4e-07 59.7 66 43.9
Glyma.15G144500 Glycine max HOM05D000045 ORTHO05D001346 1.8e-07 59.3 66 47.0
AUR62016149 Chenopodium quinoa HOM05D000045 ORTHO05D001346 2.4e-07 58.9 59 49.2
Ca_01880_v3 Cicer arietinum L. HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 47.0
Ca_01894_v3 Cicer arietinum L. HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 47.0
Haze_01087 Corylus avellana HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 43.9
Psat1g158280 Pisum sativum HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 47.0
Thecc.04G294900 Theobroma cacao HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 45.5
TPR.G27713 Trifolium pratense HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 47.0
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 2.4e-07 58.9 66 45.5
ECA233G5486 Erigeron canadensis HOM05D000045 ORTHO05D001346 3.1e-07 58.5 59 49.2
PSO210G2335 Papaver somniferum HOM05D000045 ORTHO05D001346 3.1e-07 58.5 66 45.5
PSO761G0468 Papaver somniferum HOM05D000045 ORTHO05D001346 3.1e-07 58.5 66 45.5
EL10Ac3g04925 Beta vulgaris HOM05D000045 ORTHO05D001346 4.1e-07 58.2 59 47.5
CAN.G668.26 Capsicum annuum HOM05D000045 ORTHO05D001346 4.1e-07 58.2 59 49.2
COL.COLO4_34673 Corchorus olitorius HOM05D000045 ORTHO05D001346 4.1e-07 58.2 66 43.9
Gohir.D10G175000 Gossypium hirsutum HOM05D000045 ORTHO05D001346 4.1e-07 58.2 66 45.5
Peaxi162Scf00001g00283 Petunia axillaris HOM05D000045 ORTHO05D001346 7.0e-07 57.4 59 49.2
THA.LOC104802700 Tarenaya hassleriana HOM05D000045 ORTHO05D001346 9.2e-07 57.0 59 49.2
CANSAT78G1905 Cannabis sativa HOM05D000045 ORTHO05D001346 1.2e-06 56.6 66 43.9
Gorai.011G195800 Gossypium raimondii HOM05D000045 ORTHO05D001346 1.2e-06 56.6 66 43.9
Potri.002G199300 Populus trichocarpa HOM05D000045 ORTHO05D001346 1.2e-06 56.6 52 51.9
Sabra02G0158800 Salix brachista HOM05D000045 ORTHO05D001346 1.2e-06 56.6 52 51.9
Cpa.g.sc151.57 Carica papaya HOM05D000045 ORTHO05D001346 2.0e-06 55.8 54 51.9
MD13G1158700 Malus domestica HOM05D000045 ORTHO05D001346 2.0e-06 55.8 55 47.3
Prupe.1G125700 Prunus persica HOM05D000045 ORTHO05D001346 2.0e-06 55.8 55 47.3
AUR62035065 Chenopodium quinoa HOM05D000045 ORTHO05D001346 3.5e-06 55.1 59 47.5
AUR62042947 Chenopodium quinoa HOM05D000045 ORTHO05D001346 3.5e-06 55.1 59 47.5
Duzib151G0801 Durio zibethinus HOM05D000045 ORTHO05D001346 5.9e-06 54.3 66 42.4
Eucgr.K03522 Eucalyptus grandis HOM05D000045 ORTHO05D001346 5.9e-06 54.3 59 47.5
MSTRG.17391 Avicennia marina HOM05D000045 ORTHO05D001346 7.8e-06 53.9 54 50.0


User provided reference genes

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