Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.1e-37 159.5 79 100.0
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.5e-26 121.7 79 74.7
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 9.6e-26 119.8 76 73.7
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.6e-25 119.0 77 71.4
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 2.1e-25 118.6 77 74.0
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 2.1e-25 118.6 79 69.6
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 72.2
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 3.6e-25 117.9 79 70.9
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 68.4
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 68.4
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 69.6
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 68.4
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 6.2e-25 117.1 79 68.4
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 69.6
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 68.4
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 1.1e-24 116.3 79 69.6
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 1.1e-24 116.3 78 69.2
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 68.4
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 69.6
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 1.8e-24 115.5 79 68.4
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 68.4
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 67.1
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.4e-24 115.2 79 67.1
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 69.6
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.1e-24 114.8 79 72.2
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 4.0e-24 114.4 79 67.1
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 4.0e-24 114.4 77 68.8
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 6.9e-24 113.6 77 66.2
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 67.1
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 6.9e-24 113.6 79 67.1
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 67.1
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 65.8
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 9.0e-24 113.2 79 65.8
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 9.0e-24 113.2 73 71.2
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.2e-23 112.8 79 65.8
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 65.8
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 68.4
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 67.1
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 67.1
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.5e-23 112.5 79 65.8
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.0e-23 112.1 79 63.3
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 76 67.1
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 64.6
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.6e-23 111.7 79 64.6
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 67.1
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 3.4e-23 111.3 79 65.8
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 4.4e-23 110.9 79 65.8
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 64.6
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 5.8e-23 110.5 75 68.0
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 64.6
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 62.0
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 62.0
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 5.8e-23 110.5 79 65.8
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 7.6e-23 110.2 79 67.1
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 73 69.9
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 7.6e-23 110.2 73 69.9
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 9.9e-23 109.8 77 70.1
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 64.6
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 79 63.3
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 65.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 64.6
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.7e-22 109.0 79 64.6
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 2.9e-22 108.2 75 64.0
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 63.3
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 3.8e-22 107.8 79 63.3
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 3.8e-22 107.8 75 66.7
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 4.9e-22 107.5 76 63.2
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 8.4e-22 106.7 79 62.0
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 1.4e-21 105.9 77 63.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 1.9e-21 105.5 76 64.5
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.9e-21 105.5 73 63.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 1.9e-21 105.5 73 63.0
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 1.9e-21 105.5 79 64.6
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 5.4e-21 104.0 77 61.0
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 5.4e-21 104.0 79 60.8
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 7.1e-21 103.6 79 60.8
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 7.1e-21 103.6 76 63.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 9.3e-21 103.2 79 59.5
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 9.3e-21 103.2 77 61.0
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 1.2e-20 102.8 77 59.7
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 1.6e-20 102.4 79 59.5
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-20 102.4 79 57.0
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-20 102.4 79 57.0
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.7e-20 101.7 77 59.7
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 3.5e-20 101.3 79 57.0
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.6e-20 100.9 72 62.5
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 6.0e-20 100.5 63 73.0
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 7.8e-20 100.1 76 61.8
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 7.8e-20 100.1 101 50.5
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 7.8e-20 100.1 79 59.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 1.0e-19 99.8 78 57.7
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.3e-19 99.4 65 70.8
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.3e-19 99.4 78 59.0
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.3e-19 99.4 78 59.0
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.7e-19 99.0 79 54.4
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 2.3e-19 98.6 60 73.3
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.3e-19 98.6 79 55.7
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.0e-19 98.2 61 72.1
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 6.6e-19 97.1 69 60.9
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 8.7e-19 96.7 61 70.5
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 8.7e-19 96.7 59 72.9
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.1e-18 96.3 78 56.4
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 1.5e-18 95.9 66 65.2
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.5e-18 95.9 73 57.5
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.9e-18 95.5 79 55.7
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.5e-18 95.1 63 68.3
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.3e-18 94.7 73 58.9
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 3.3e-18 94.7 67 61.2
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 7.3e-18 93.6 76 57.9
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.6e-18 93.2 86 51.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 9.6e-18 93.2 69 56.5
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.6e-17 92.4 79 53.2
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.6e-17 92.4 79 54.4
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 2.8e-17 91.7 79 51.9
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 51.9
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 51.9
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 51.9
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 3.6e-17 91.3 79 51.9
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.4e-16 89.4 76 51.3
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.4e-16 89.4 57 71.9
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.4e-16 89.4 79 50.6
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-16 87.8 75 53.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 4.0e-16 87.8 75 53.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 4.0e-16 87.8 75 53.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 4.0e-16 87.8 75 53.3
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.0e-16 87.8 76 52.6
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 4.0e-16 87.8 76 52.6
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 6.9e-16 87.0 74 50.0
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 1.2e-15 86.3 54 70.4
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 3.4e-15 84.7 81 48.1
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 3.4e-15 84.7 76 55.3
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 4.5e-15 84.3 66 56.1
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 4.5e-15 84.3 69 52.2
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 7.6e-15 83.6 59 59.3
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.3e-14 82.8 67 53.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 3.8e-14 81.3 53 64.2
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 6.4e-14 80.5 53 62.3
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 3.2e-13 78.2 65 52.3
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 5.4e-13 77.4 65 50.8
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 6.7e-11 70.5 59 50.8
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 3.7e-09 64.7 50 62.0
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.2e-07 59.7 65 43.1
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 4.5e-07 57.8 68 38.2
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.5e-07 57.8 68 39.7
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.9e-06 55.1 85 35.3


User provided reference genes

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