Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.7e-182 642.5 317 100.0
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 8.8e-147 523.9 318 77.7
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 3.7e-145 518.5 317 78.2
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 1.4e-144 516.5 318 77.0
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.2e-143 513.5 318 76.7
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 5.9e-143 511.1 314 78.3
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.2e-141 505.0 318 77.0
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.5e-141 504.6 318 77.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-139 499.6 318 76.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 6.8e-139 497.7 318 75.2
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 8.8e-139 497.3 319 74.0
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 5.7e-138 494.6 312 74.0
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 7.5e-138 494.2 379 65.7
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 9.8e-138 493.8 316 75.3
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 4.9e-137 491.5 318 73.6
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.4e-136 489.2 318 73.6
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 3.1e-136 488.8 320 75.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 9.2e-136 487.3 317 72.9
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.2e-135 486.9 317 72.9
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 2.0e-135 486.1 317 72.6
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.7e-135 485.7 318 71.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 1.3e-134 483.4 316 72.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 6.6e-134 481.1 328 71.0
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 6.6e-134 481.1 316 72.2
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.1e-133 480.3 320 71.2
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.5e-133 479.9 318 72.3
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.9e-133 479.6 318 73.0
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 2.5e-133 479.2 317 72.9
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 9.5e-133 477.2 315 73.7
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.6e-132 476.5 330 69.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 2.1e-132 476.1 348 67.0
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.1e-132 476.1 319 71.8
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.8e-132 475.7 317 70.3
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.8e-132 475.7 317 70.7
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 2.8e-132 475.7 318 69.5
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 2.8e-132 475.7 320 73.8
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.8e-132 475.7 317 71.6
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 3.6e-132 475.3 319 71.8
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 6.1e-132 474.6 319 71.8
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 8.0e-132 474.2 320 72.5
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.4e-131 473.4 326 69.0
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.8e-131 473.0 317 72.6
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.3e-131 472.6 317 70.0
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 3.0e-131 472.2 297 75.4
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 4.0e-131 471.9 316 69.9
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 4.0e-131 471.9 326 69.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.2e-130 470.3 326 70.2
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 1.2e-130 470.3 300 76.3
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.2e-130 470.3 319 71.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 2.0e-130 469.5 318 69.5
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 5.7e-130 468.0 318 69.5
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 3.2e-128 462.2 314 72.6
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-127 460.3 341 64.5
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.6e-127 459.9 315 70.2
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.0e-127 459.5 341 64.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.0e-127 459.5 314 70.1
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.7e-127 459.1 341 64.5
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 4.6e-127 458.4 315 68.9
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 1.0e-126 457.2 317 68.1
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.7e-126 456.4 275 78.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.7e-126 456.4 315 67.6
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.3e-126 456.1 307 70.4
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 2.3e-126 456.1 307 70.4
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 6.6e-126 454.5 353 64.0
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.9e-125 453.0 304 70.4
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 3.3e-125 452.2 297 72.1
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.3e-125 451.8 308 71.8
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 9.5e-125 450.7 316 68.4
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.6e-124 449.9 317 68.5
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.1e-124 449.5 320 68.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 3.1e-123 445.7 316 65.2
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 5.2e-123 444.9 316 65.2
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 6.8e-123 444.5 316 65.2
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 6.8e-123 444.5 316 66.8
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 6.8e-123 444.5 316 66.5
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 8.9e-123 444.1 316 66.5
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 8.9e-123 444.1 312 67.9
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.5e-122 443.4 297 72.7
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 2.6e-122 442.6 309 67.3
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 3.4e-122 442.2 315 66.3
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.4e-122 441.8 300 72.0
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 5.8e-122 441.4 318 67.9
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 7.5e-122 441.0 309 67.6
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 7.5e-122 441.0 318 67.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 7.5e-122 441.0 304 69.4
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.7e-121 439.9 340 65.0
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 2.2e-121 439.5 304 67.8
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.9e-121 439.1 320 67.5
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.7e-121 438.7 296 69.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 3.7e-121 438.7 296 70.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 6.4e-121 438.0 316 65.8
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.1e-120 437.2 318 67.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 1.9e-120 436.4 309 66.7
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.2e-119 433.7 317 65.6
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.7e-119 432.6 317 65.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 1.3e-118 430.3 354 62.7
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.3e-118 429.5 318 67.6
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 7.3e-117 424.5 318 67.0
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 7.3e-117 424.5 318 67.0
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 1.4e-115 420.2 309 64.7
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 3.4e-114 415.6 310 65.8
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.4e-114 415.6 285 68.4
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.9e-113 412.5 274 70.4
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 4.9e-113 411.8 318 64.8
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.5e-109 400.2 320 62.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 6.2e-108 394.8 333 60.7
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.4e-106 389.0 311 62.1
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 6.0e-103 378.3 249 72.3
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.9e-101 373.2 341 56.3
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.4e-99 366.3 297 62.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.0e-90 336.7 269 63.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 6.4e-89 331.6 314 52.2
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 6.7e-86 321.6 221 71.0
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 7.4e-85 318.2 303 51.5
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.3e-83 312.0 318 53.8
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 6.9e-83 311.6 275 53.5
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 9.0e-83 311.2 317 53.3
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.5e-82 310.5 243 60.5
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 7.6e-82 308.1 322 50.3
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 5.5e-80 302.0 297 50.2
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 1.9e-77 293.5 316 50.0
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.3e-76 290.8 292 49.0
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 4.0e-75 285.8 309 51.5
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 7.4e-45 185.3 294 36.4
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.8e-44 182.6 108 75.9
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.8e-38 161.8 96 76.0
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 1.5e-37 161.0 324 31.2
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 2.6e-37 160.2 126 61.9
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.0e-34 150.6 92 75.0
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 5.2e-30 136.0 96 66.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.8e-30 135.6 94 68.1
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.8e-30 135.2 94 68.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 7.5e-29 132.1 116 58.6
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.8e-28 129.4 87 69.0
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-27 127.5 87 67.8
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-26 124.0 84 69.0
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 5.9e-26 122.5 286 30.8
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 2.3e-25 120.6 91 64.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-22 111.7 79 65.8
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-22 110.9 78 66.7
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-22 110.9 78 66.7
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-22 109.8 78 65.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-21 108.2 79 64.6
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-21 107.8 78 64.1
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.6e-21 107.1 78 65.4
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 4.4e-21 106.3 110 53.6
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.7e-21 105.9 70 70.0
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 9.8e-21 105.1 110 53.6
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-20 104.8 79 63.3
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.2e-20 104.0 239 31.0
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-19 100.9 79 62.0
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 7.0e-19 99.0 104 52.9
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-18 98.2 101 54.5
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.8e-15 87.0 92 50.0
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.8e-15 87.0 78 51.3
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 3.6e-15 86.7 76 56.6
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 8.9e-14 82.0 45 82.2
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-13 81.3 48 77.1
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.3e-12 78.2 60 61.7
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-11 75.1 45 73.3
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.4e-11 74.7 67 56.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 1.9e-08 64.3 52 59.6
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.6e-08 62.8 51 64.7
Gohir.D01G066700 Gossypium hirsutum HOM05D000706 ORTHO05D013538 1.1e-06 58.5 51 54.9
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-06 58.2 43 62.8
Gohir.D09G143401 Gossypium hirsutum HOM05D000706 ORTHO05D013538 2.3e-06 57.4 51 54.9
Gorai.007G356500 Gossypium raimondii HOM05D000706 ORTHO05D013538 2.3e-06 57.4 51 54.9
Gohir.D06G127100 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.1e-06 57.0 39 64.1
Gohir.D09G037400 Gossypium hirsutum HOM05D000706 ORTHO05D013538 3.1e-06 57.0 39 64.1
Gohir.D13G142000 Gossypium hirsutum HOM05D000706 ORTHO05D013538 5.2e-06 56.2 51 52.9
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 6.8e-06 55.8 42 64.3
Gohir.D03G122500 Gossypium hirsutum HOM05D000706 ORTHO05D013538 6.8e-06 55.8 39 61.5
Gohir.D01G081300 Gossypium hirsutum HOM05D000706 ORTHO05D013538 8.9e-06 55.5 39 61.5
Gohir.D06G138051 Gossypium hirsutum HOM05D000706 ORTHO05D013538 8.9e-06 55.5 39 64.1


User provided reference genes

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