Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 3.5e-79 298.1 141 100.0
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.6e-21 105.9 63 77.8
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 2.4e-19 99.4 62 71.0
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 3.1e-19 99.0 60 75.0
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 6.9e-19 97.8 69 62.3
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.5e-18 96.7 60 75.0
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.0e-18 96.3 60 70.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-18 96.3 60 75.0
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 3.4e-18 95.5 65 69.2
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 3.4e-18 95.5 61 67.2
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.9e-18 94.7 65 69.2
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.9e-18 94.7 60 73.3
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 5.9e-18 94.7 60 70.0
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 7.7e-18 94.4 57 75.4
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.0e-17 94.0 62 71.0
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.3e-17 93.6 61 70.5
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 1.7e-17 93.2 61 67.2
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.7e-17 93.2 61 67.2
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 1.7e-17 93.2 60 70.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 2.2e-17 92.8 60 70.0
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 6.5e-17 91.3 60 68.3
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 6.5e-17 91.3 60 66.7
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 8.5e-17 90.9 60 68.3
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.1e-16 90.5 60 70.0
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 1.1e-16 90.5 60 66.7
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.1e-16 90.5 60 68.3
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 70.0
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 70.0
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 70.0
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 70.0
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 66.7
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 66.7
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 66.7
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 68.3
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 66.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 1.4e-16 90.1 60 65.0
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 3.2e-16 89.0 60 68.3
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 3.2e-16 89.0 60 68.3
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 3.2e-16 89.0 60 71.7
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 4.2e-16 88.6 60 68.3
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 4.2e-16 88.6 60 68.3
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 4.2e-16 88.6 60 68.3
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 4.2e-16 88.6 60 68.3
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 5.5e-16 88.2 60 65.0
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 5.5e-16 88.2 61 68.9
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 9.4e-16 87.4 60 66.7
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 2.1e-15 86.3 111 42.3
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.6e-15 85.5 60 65.0
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 6.1e-15 84.7 57 68.4
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 1.8e-14 83.2 61 63.9
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 2.3e-14 82.8 61 62.3
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 2.3e-14 82.8 61 62.3
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 2.3e-14 82.8 61 62.3
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 3.0e-14 82.4 60 60.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 5.2e-14 81.6 61 60.7
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 6.7e-14 81.3 60 60.0
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 6.7e-14 81.3 61 63.9
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 8.8e-14 80.9 61 62.3
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 8.8e-14 80.9 61 62.3
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 1.1e-13 80.5 60 63.3
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 7.4e-13 77.8 60 60.0
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 2.8e-12 75.9 61 57.4
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.1e-11 73.9 50 60.0
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 1.1e-11 73.9 61 59.0
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 1.8e-11 73.2 61 57.4
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 2.4e-11 72.8 60 53.3
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 3.1e-11 72.4 53 58.5
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.3e-11 71.6 53 56.6
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 7.0e-11 71.2 53 60.4
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 7.0e-11 71.2 53 56.6
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 7.0e-11 71.2 50 62.0
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-10 70.5 47 68.1
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 2.6e-10 69.3 53 58.5
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 2.6e-10 69.3 63 49.2
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.0e-09 67.4 53 54.7
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.3e-09 67.0 55 50.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.3e-09 67.0 58 56.9
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 2.9e-09 65.9 60 48.3
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 3.8e-09 65.5 55 49.1
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 3.8e-09 65.5 55 49.1
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 5.0e-09 65.1 57 50.9
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 6.5e-09 64.7 55 49.1
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 6.5e-09 64.7 55 49.1
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 6.5e-09 64.7 46 60.9
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 6.5e-09 64.7 61 52.5
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.1e-08 63.9 55 47.3
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.1e-08 63.9 53 52.8
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 2.5e-08 62.8 57 52.6
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.2e-08 62.4 55 50.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 4.2e-08 62.0 59 50.8
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 4.2e-08 62.0 57 50.9
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 7.2e-08 61.2 53 52.8
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.6e-07 60.1 53 49.1
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 2.1e-07 59.7 56 51.8
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 2.7e-07 59.3 60 46.7
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 3.6e-07 58.9 53 50.9
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 4.7e-07 58.5 49 55.1
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 6.1e-07 58.2 55 47.3
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 6.1e-07 58.2 43 58.1
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.1e-07 58.2 53 47.2
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 6.1e-07 58.2 53 47.2
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 8.0e-07 57.8 53 50.9
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 8.0e-07 57.8 53 49.1
CARHR049680 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.0e-06 57.4 42 61.9
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 1.0e-06 57.4 56 41.1
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.0e-06 57.4 60 43.3
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.4e-06 57.0 57 47.4
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.4e-06 57.0 53 49.1
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 1.8e-06 56.6 57 45.6
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.8e-06 56.6 66 40.9
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 2.3e-06 56.2 41 61.0


User provided reference genes

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