Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002820 Simmondsia chinensis HOM05D003286 ORTHO05D002463 2.8e-71 271.9 146 100.0
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 3.6e-34 148.7 157 49.7
AUR62020422 Chenopodium quinoa HOM05D003286 ORTHO05D002463 1.3e-31 140.2 146 47.3
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 9.1e-30 134.0 142 47.2
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.9e-28 129.0 142 48.6
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 1.1e-27 127.1 142 47.9
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 2.5e-27 125.9 142 47.2
AUR62015794 Chenopodium quinoa HOM05D003286 ORTHO05D002463 7.2e-27 124.4 132 43.9
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 1.6e-26 123.2 142 45.1
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 2.1e-26 122.9 144 43.8
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.1e-26 122.9 141 46.1
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 4.7e-26 121.7 143 47.6
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.8e-25 119.8 142 45.1
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 2.3e-25 119.4 142 45.1
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 3.0e-25 119.0 150 44.0
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 5.1e-25 118.2 142 43.0
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 6.7e-25 117.9 119 47.9
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 2.6e-24 115.9 142 42.3
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 7.4e-24 114.4 142 50.0
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 9.7e-24 114.0 143 42.0
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 1.7e-23 113.2 133 45.1
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 3.7e-23 112.1 155 39.4
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 3.7e-23 112.1 143 37.8
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.8e-23 111.7 138 42.8
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 4.8e-23 111.7 144 40.3
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 6.3e-23 111.3 144 37.5
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 6.3e-23 111.3 144 41.7
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 1.1e-22 110.5 136 39.0
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 2.4e-22 109.4 145 45.5
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 3.1e-22 109.0 138 42.8
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 5.3e-22 108.2 146 41.8
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 5.3e-22 108.2 145 40.0
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 5.3e-22 108.2 142 44.4
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 9.1e-22 107.5 150 46.7
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 1.2e-21 107.1 143 39.9
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 1.5e-21 106.7 143 46.9
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 1.5e-21 106.7 161 37.3
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 1.5e-21 106.7 142 39.4
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 2.0e-21 106.3 143 46.9
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 2.0e-21 106.3 143 39.2
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 2.0e-21 106.3 146 40.4
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 2.6e-21 105.9 143 41.3
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 3.4e-21 105.5 142 37.3
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.4e-21 105.5 142 41.5
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 3.4e-21 105.5 85 52.9
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 3.4e-21 105.5 139 39.6
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 5.9e-21 104.8 144 38.2
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 7.7e-21 104.4 153 45.8
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.0e-20 104.0 152 45.4
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 1.7e-20 103.2 138 46.4
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 2.9e-20 102.4 159 38.4
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 5.0e-20 101.7 85 50.6
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 6.5e-20 101.3 144 37.5
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 6.5e-20 101.3 146 37.7
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.1e-19 100.5 129 43.4
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.1e-19 100.5 139 41.0
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.9e-19 99.8 153 45.1
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.5e-19 99.4 85 51.8
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 3.2e-19 99.0 129 42.6
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.2e-19 99.0 85 51.8
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 3.2e-19 99.0 85 51.8
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.2e-19 98.6 134 42.5
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 5.5e-19 98.2 157 36.3
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 7.2e-19 97.8 144 37.5
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 7.2e-19 97.8 85 50.6
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 1.6e-18 96.7 121 43.0
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.6e-18 96.7 129 41.1
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.1e-18 96.3 155 40.6
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 2.7e-18 95.9 158 39.2
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 3.6e-18 95.5 87 47.1
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 8.0e-18 94.4 82 51.2
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.4e-17 93.6 86 47.7
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 1.8e-17 93.2 145 45.5
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 5.2e-17 91.7 80 50.0
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 1.1e-16 90.5 115 41.7
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.0e-16 89.7 85 47.1
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 2.6e-16 89.4 85 45.9
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.6e-16 89.4 85 45.9
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 2.6e-16 89.4 85 47.1
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 3.3e-16 89.0 85 49.4
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.3e-16 89.0 85 45.9
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 3.3e-16 89.0 84 46.4
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 4.4e-16 88.6 84 46.4
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 4.4e-16 88.6 84 46.4
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.7e-16 88.2 85 45.9
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 5.7e-16 88.2 85 47.1
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 7.4e-16 87.8 141 44.0
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 7.4e-16 87.8 141 38.3
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 9.7e-16 87.4 145 46.2
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 1.3e-15 87.0 85 47.1
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.7e-15 86.7 85 45.9
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.7e-15 86.7 141 35.5
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.7e-15 86.7 85 47.1
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.2e-15 86.3 85 45.9
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 2.2e-15 86.3 87 50.6
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 2.8e-15 85.9 85 45.9
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 2.8e-15 85.9 85 45.9
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 3.7e-15 85.5 85 45.9
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 3.7e-15 85.5 85 45.9
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 3.7e-15 85.5 85 45.9
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 3.7e-15 85.5 85 45.9
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 3.7e-15 85.5 85 45.9
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 4.8e-15 85.1 85 45.9
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 4.8e-15 85.1 85 45.9
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 4.8e-15 85.1 85 45.9
Hund01018 Selenicereus undatus HOM05D003286 ORTHO05D002463 1.4e-14 83.6 136 41.2
Phvul.007G052300 Phaseolus vulgaris HOM05D003286 ORTHO05D050290 3.1e-14 82.4 144 36.1
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 3.1e-14 82.4 134 40.3
CDE04G2878 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 1.6e-13 80.1 145 35.2
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 2.0e-13 79.7 78 48.7
Zm00001eb225210 Zea mays HOM05D003286 ORTHO05D002463 3.8e-12 75.5 138 34.8
Zm00001eb101690 Zea mays HOM05D003286 ORTHO05D002463 6.5e-12 74.7 86 47.7
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 1.1e-11 73.9 70 45.7
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 1.1e-11 73.9 77 42.9
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 1.1e-11 73.9 70 45.7
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 1.5e-11 73.6 70 45.7
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 1.9e-11 73.2 70 45.7
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 1.9e-11 73.2 70 45.7
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.5e-11 72.8 82 41.5
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 2.5e-11 72.8 127 35.4
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 5.5e-11 71.6 86 43.0
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 7.2e-11 71.2 86 40.7
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 7.2e-11 71.2 86 40.7
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 9.4e-11 70.9 82 43.9
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.2e-10 70.5 86 39.5
BcaC03g16191 Brassica carinata HOM05D003286 ORTHO05D002463 1.2e-10 70.5 85 42.4
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 1.2e-10 70.5 70 42.9
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 1.2e-10 70.5 77 42.9
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 1.2e-10 70.5 145 32.4
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 1.6e-10 70.1 70 42.9
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 3.6e-10 68.9 70 47.1
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 6.1e-10 68.2 75 42.7
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 6.1e-10 68.2 69 46.4
Os09g0481650 Oryza sativa ssp. japonica HOM05D003286 ORTHO05D002463 6.1e-10 68.2 81 44.4
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 8.0e-10 67.8 88 38.6
MD05G1341300 Malus domestica HOM05D003286 ORTHO05D002463 1.0e-09 67.4 45 60.0
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.3e-09 66.2 138 29.7
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 3.0e-09 65.9 68 42.6
Eucgr.D01290 Eucalyptus grandis HOM05D003286 ORTHO05D002463 3.0e-09 65.9 60 53.3
VMungo0720G0674 Vigna mungo HOM05D003286 ORTHO05D002463 8.8e-09 64.3 144 31.2
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 1.5e-08 63.5 111 37.8
PSO541G5792 Papaver somniferum HOM05D007466 ORTHO05D002463 1.5e-08 63.5 144 30.6
PSO675G1565 Papaver somniferum HOM05D007466 ORTHO05D002463 1.5e-08 63.5 144 30.6
Aqoxy4G01992 Aquilegia oxysepala HOM05D007466 ORTHO05D002463 2.0e-08 63.2 142 27.5
CARHR252290 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.3e-08 62.4 80 38.8
TAR624G0130 Trochodendron aralioides HOM05D003286 ORTHO05D002463 4.4e-08 62.0 129 31.8
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 4.4e-08 62.0 118 31.4
SGA_v2.0_scaffold49G18335 Striga asiatica HOM05D003065 ORTHO05D003802 1.3e-07 60.5 149 28.9
TAR624G0182 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.3e-07 60.5 129 32.6
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 1.7e-07 60.1 58 43.1
TAR624G1349 Trochodendron aralioides HOM05D003286 ORTHO05D002463 1.7e-07 60.1 129 31.0
TAR624G0858 Trochodendron aralioides HOM05D003286 ORTHO05D002463 2.2e-07 59.7 128 32.0
COL.COLO4_27678 Corchorus olitorius HOM05D007466 ORTHO05D002463 4.8e-07 58.5 146 28.1
GSVIVG01030614001 Vitis vinifera HOM05D007466 ORTHO05D002463 4.8e-07 58.5 145 29.0
Actinidia32076 Actinidia chinensis HOM05D007466 ORTHO05D002463 8.2e-07 57.8 146 27.4
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 1.1e-06 57.4 77 35.1
Oeu048075.1 Olea europaea HOM05D007466 ORTHO05D002463 1.1e-06 57.4 145 26.9
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 1.4e-06 57.0 61 41.0
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 1.4e-06 57.0 61 41.0
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 1.4e-06 57.0 61 41.0
Cc00_g30040 Coffea canephora HOM05D007466 ORTHO05D002463 1.4e-06 57.0 146 27.4
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.8e-06 56.6 71 33.8
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 1.8e-06 56.6 75 36.0
CDE05G0337 Ceratophyllum demersum HOM05D007466 ORTHO05D002463 1.8e-06 56.6 142 27.5
EL10Ac2g04092 Beta vulgaris HOM05D007466 ORTHO05D002463 2.4e-06 56.2 145 26.9
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 2.4e-06 56.2 143 30.1
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 3.1e-06 55.8 76 35.5
DCAR_021185 Daucus carota HOM05D007466 ORTHO05D002463 3.1e-06 55.8 144 27.1
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 3.1e-06 55.8 68 38.2
CSS0032012 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 4.1e-06 55.5 146 28.8
CANSAT64G0630 Cannabis sativa HOM05D007466 ORTHO05D002463 4.1e-06 55.5 146 29.5
Hund13322 Selenicereus undatus HOM05D001006 ORTHO05D002463 4.1e-06 55.5 117 35.0
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 5.3e-06 55.1 70 35.7
Dinv18525 Davidia involucrata HOM05D007466 ORTHO05D002463 5.3e-06 55.1 146 27.4
HanXRQChr14g0459021 Helianthus annuus HOM05D007466 ORTHO05D002463 5.3e-06 55.1 144 29.2
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 7.0e-06 54.7 61 39.3
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 7.0e-06 54.7 61 39.3
MELO3C018805.2 Cucumis melo HOM05D007466 ORTHO05D002463 7.0e-06 54.7 51 47.1
Thhalv10002923m.g Eutrema salsugineum HOM05D007466 ORTHO05D002463 7.0e-06 54.7 143 28.0


User provided reference genes

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