Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.9e-162 575.9 304 100.0
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 9.1e-141 503.8 304 82.9
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.2e-140 503.4 303 86.5
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.0e-140 502.7 304 82.9
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.0e-140 502.7 302 81.8
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.5e-140 501.5 305 83.6
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 4.5e-140 501.5 304 85.9
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 7.7e-140 500.7 302 84.8
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.0e-139 500.4 308 84.4
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 8.5e-139 497.3 302 85.1
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 8.5e-139 497.3 301 84.1
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.4e-138 496.5 279 86.7
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.4e-138 496.5 301 83.7
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.2e-138 495.4 302 84.1
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 4.2e-138 495.0 303 79.9
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 4.2e-138 495.0 299 81.6
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.5e-138 494.6 304 82.9
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.6e-137 493.0 298 84.9
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.6e-137 493.0 279 85.7
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.1e-137 492.7 304 82.2
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 2.7e-137 492.3 300 84.3
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 3.6e-137 491.9 281 85.8
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 3.6e-137 491.9 299 84.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 3.6e-137 491.9 302 82.1
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 4.7e-137 491.5 279 85.7
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.1e-137 491.1 302 83.8
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.9e-137 490.7 301 82.1
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.0e-136 490.3 302 80.5
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.0e-136 490.3 278 85.6
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.0e-136 490.3 298 84.6
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.4e-136 490.0 302 83.4
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.8e-136 489.6 279 85.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.8e-136 489.6 303 80.9
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.0e-136 488.8 302 82.5
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 3.0e-136 488.8 281 85.8
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 5.1e-136 488.0 279 86.4
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 8.8e-136 487.3 299 81.9
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 301 81.4
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-135 486.9 301 81.4
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 1.5e-135 486.5 278 85.3
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.5e-135 486.5 303 83.5
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 2.6e-135 485.7 278 84.5
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 2.6e-135 485.7 300 82.7
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.3e-135 485.3 278 84.9
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 3.3e-135 485.3 278 84.9
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.3e-135 485.3 278 84.9
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.3e-135 485.3 278 84.9
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.3e-135 485.3 278 84.9
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.3e-135 485.3 304 81.2
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 4.4e-135 485.0 299 79.6
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 5.7e-135 484.6 299 82.9
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 7.4e-135 484.2 278 85.3
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 9.7e-135 483.8 299 82.3
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 1.3e-134 483.4 299 81.3
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.3e-134 483.4 278 84.2
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.7e-134 483.0 297 81.8
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.7e-134 483.0 278 84.9
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.7e-134 483.0 278 84.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.7e-134 483.0 299 82.3
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 2.2e-134 482.6 278 83.8
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.2e-134 482.6 306 79.4
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 3.7e-134 481.9 278 83.8
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.7e-134 481.9 299 81.6
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 3.7e-134 481.9 299 80.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 3.7e-134 481.9 278 84.9
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 6.3e-134 481.1 281 85.1
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 6.3e-134 481.1 299 79.6
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.2e-134 480.7 278 83.8
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 8.2e-134 480.7 280 83.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-133 480.3 299 79.3
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.8e-133 479.6 278 84.9
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.4e-133 479.2 278 83.5
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 4.1e-133 478.4 299 78.6
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.3e-133 478.0 278 84.5
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 7.0e-133 477.6 297 83.5
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 9.1e-133 477.2 278 83.5
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 9.1e-133 477.2 299 80.9
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.2e-132 476.9 299 78.9
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.5e-132 476.5 278 82.7
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.6e-132 475.7 301 81.7
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 2.6e-132 475.7 278 81.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 3.5e-132 475.3 304 78.3
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 7.7e-132 474.2 274 83.9
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.3e-131 473.4 295 79.7
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.7e-131 473.0 301 79.1
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 2.2e-131 472.6 280 84.3
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.8e-131 471.9 290 81.4
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 5.0e-131 471.5 299 79.6
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.5e-131 470.7 280 83.9
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.1e-130 470.3 302 80.1
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.1e-130 470.3 301 78.1
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.5e-130 469.9 281 82.9
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.5e-130 469.2 279 83.9
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 3.2e-130 468.8 278 82.7
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 4.2e-130 468.4 279 82.1
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.1e-129 466.1 303 78.2
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 2.1e-129 466.1 281 80.8
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.4e-128 463.4 299 77.9
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.8e-128 463.0 279 81.7
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.3e-128 462.6 269 84.8
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.2e-128 461.5 281 81.1
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 6.7e-128 461.1 279 81.7
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.5e-127 459.9 281 81.1
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 7.4e-127 457.6 280 82.5
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.3e-126 456.8 286 79.7
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 3.7e-126 455.3 279 80.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.8e-126 454.9 314 75.2
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 5.3e-125 451.4 279 80.3
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 5.3e-125 451.4 279 78.9
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 9.1e-125 450.7 302 80.8
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 3.5e-124 448.7 283 79.9
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 3.5e-124 448.7 278 80.6
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 7.7e-124 447.6 278 78.1
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 1.9e-122 443.0 278 78.1
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 3.2e-122 442.2 275 79.3
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.1e-121 439.5 303 74.6
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 2.7e-121 439.1 385 65.5
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 2.7e-121 439.1 251 84.5
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.6e-121 438.7 277 79.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.8e-120 436.4 328 73.2
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.1e-117 427.2 275 80.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 2.9e-115 419.1 242 84.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 7.2e-114 414.5 291 72.9
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 7.2e-114 414.5 278 76.6
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.5e-111 406.8 251 79.7
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 9.8e-111 404.1 219 89.5
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.2e-110 402.9 219 89.0
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 4.5e-108 395.2 250 76.8
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.0e-107 394.0 276 69.2
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.3e-107 393.7 216 87.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.3e-107 393.7 216 87.0
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.6e-105 386.7 251 74.1
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 1.8e-104 383.3 248 72.2
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 7.8e-100 367.9 218 82.6
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 8.6e-99 364.4 310 64.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 7.3e-98 361.3 198 87.4
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 4.7e-97 358.6 257 66.9
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 1.1e-90 337.4 215 79.1
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.1e-88 330.9 180 87.2
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 1.1e-88 330.9 180 89.4
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 3.7e-86 322.4 208 77.9
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 3.1e-80 302.8 172 85.5
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 8.3e-78 294.7 180 81.1
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.1e-76 290.0 219 71.7
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.7e-70 270.4 152 86.8
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.1e-68 263.5 194 68.6
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.1e-65 253.4 145 84.1
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.1e-56 224.6 209 60.8
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 7.6e-47 191.8 119 75.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 2.2e-46 190.3 157 63.7
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.8e-46 189.5 236 47.0
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.4e-45 187.6 135 71.9
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 7.4e-42 175.3 177 60.5
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-40 171.0 105 77.1
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.8e-35 154.1 86 83.7
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.3e-35 153.7 95 76.8
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 2.2e-30 137.1 305 34.4
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.4e-29 134.4 88 75.0
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 9.4e-29 131.7 100 68.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 1.0e-27 128.3 209 41.6
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-24 117.9 69 84.1
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 3.1e-24 116.7 65 87.7
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 3.1e-24 116.7 170 41.2
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 2.4e-16 90.5 57 78.9
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.0e-16 89.0 62 71.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.0e-16 89.0 62 71.0
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 2.0e-15 87.4 156 38.5
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-14 84.3 83 54.2
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 5.0e-14 82.8 83 67.5
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 1.9e-13 80.9 79 54.4
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.4e-11 74.7 62 62.9
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.4e-11 74.7 92 46.7
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 3.3e-10 70.1 103 42.7
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 5.7e-10 69.3 110 39.1
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 3.7e-09 66.6 45 71.1
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.1e-08 65.1 76 48.7
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 9.1e-08 62.0 53 62.3
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 9.1e-08 62.0 43 72.1
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 4.5e-07 59.7 57 49.1
MCO17G054 Micromonas commoda HOM05D003815 ORTHO05D270498 7.7e-07 58.9 142 32.4
Actinidia37470 Actinidia chinensis HOM05D003815 ORTHO05D004218 2.9e-06 57.0 35 74.3


User provided reference genes

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