Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.5e-61 238.0 147 100.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 1.0e-52 210.3 146 72.6
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.1e-51 206.8 146 84.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 4.2e-51 204.9 146 84.9
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.4e-51 203.8 146 67.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 9.4e-51 203.8 146 67.8
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 9.4e-51 203.8 146 67.8
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 9.4e-51 203.8 145 69.7
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 4.7e-50 201.4 146 72.6
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 6.1e-50 201.1 145 68.3
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 7.9e-50 200.7 145 69.0
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.0e-49 200.3 146 82.9
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.4e-49 199.9 146 68.5
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 2.3e-49 199.1 146 67.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.3e-49 199.1 145 68.3
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 3.0e-49 198.7 146 84.9
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 5.1e-49 198.0 146 81.5
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.0e-48 196.1 146 81.5
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.6e-48 195.7 146 82.2
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 4.4e-48 194.9 146 81.5
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 7.4e-48 194.1 146 64.4
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 9.7e-48 193.7 146 82.9
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.7e-47 193.0 146 82.2
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 2.2e-47 192.6 146 80.8
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.7e-47 191.8 145 81.4
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 4.8e-47 191.4 146 71.9
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 8.2e-47 190.7 145 80.7
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 1.1e-46 190.3 143 69.2
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 1.1e-46 190.3 143 69.9
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.1e-46 190.3 143 69.2
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 1.1e-46 190.3 143 69.9
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 1.1e-46 190.3 145 82.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-46 190.3 146 81.5
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 1.1e-46 190.3 146 84.9
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 3.1e-46 188.7 143 73.4
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 3.1e-46 188.7 145 81.4
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.1e-46 188.7 146 80.8
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 4.1e-46 188.3 143 69.2
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.1e-46 188.3 146 80.8
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 4.1e-46 188.3 143 69.2
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 7.0e-46 187.6 146 80.1
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 7.0e-46 187.6 163 60.1
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 7.0e-46 187.6 146 82.2
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 9.1e-46 187.2 146 80.1
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 1.2e-45 186.8 146 60.3
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 1.2e-45 186.8 146 80.1
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.0e-45 186.0 143 65.0
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 2.0e-45 186.0 143 65.0
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 3.4e-45 185.3 146 80.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 4.5e-45 184.9 146 77.4
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.0e-44 183.7 146 65.1
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 1.3e-44 183.3 145 69.0
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 1.7e-44 183.0 146 79.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.2e-44 182.6 146 69.9
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.2e-44 182.6 145 77.2
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 2.9e-44 182.2 146 78.8
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 3.8e-44 181.8 143 64.3
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 5.0e-44 181.4 143 62.2
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 2.5e-43 179.1 145 77.2
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 4.2e-43 178.3 146 77.4
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 5.5e-43 177.9 145 75.2
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 7.2e-43 177.6 145 78.6
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 9.4e-43 177.2 143 79.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 9.4e-43 177.2 146 78.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.6e-42 175.3 147 75.5
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 4.7e-42 174.9 146 76.7
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 6.1e-42 174.5 143 76.2
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 3.9e-41 171.8 146 76.7
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.7e-41 171.0 146 76.0
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 6.7e-41 171.0 146 76.0
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 8.8e-41 170.6 154 71.4
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.1e-40 170.2 146 76.7
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.5e-40 169.9 145 61.4
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.7e-39 166.4 143 58.7
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 2.2e-39 166.0 146 75.3
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 2.2e-39 166.0 146 75.3
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.7e-39 165.2 146 73.3
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 3.7e-39 165.2 145 74.5
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.7e-39 165.2 173 53.8
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.7e-39 165.2 131 66.4
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 6.3e-39 164.5 94 84.0
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 8.2e-39 164.1 145 60.0
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 1.1e-38 163.7 146 72.6
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 1.1e-38 163.7 145 71.0
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.1e-38 163.7 146 72.6
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.1e-38 163.7 170 65.9
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 1.8e-38 162.9 145 71.7
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.8e-38 162.9 145 72.4
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 3.1e-38 162.2 146 72.6
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 5.3e-38 161.4 146 72.6
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 7.0e-38 161.0 146 72.6
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 7.0e-38 161.0 146 71.9
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 7.0e-38 161.0 146 71.9
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 9.1e-38 160.6 178 60.1
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 9.1e-38 160.6 178 60.1
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 9.1e-38 160.6 141 58.2
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.0e-37 159.5 132 81.1
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.6e-37 159.1 146 70.5
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 1.0e-36 157.1 140 75.0
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.7e-36 156.4 150 72.0
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 6.5e-36 154.5 154 67.5
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 6.5e-36 154.5 130 78.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 1.5e-35 153.3 146 67.8
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.5e-35 152.5 146 69.9
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 3.6e-34 148.7 162 52.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.7e-34 148.3 146 68.5
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.0e-33 147.1 121 64.5
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.2e-32 143.7 132 73.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 2.6e-32 142.5 119 63.0
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 7.5e-32 141.0 122 58.2
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 7.5e-32 141.0 118 62.7
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 7.5e-32 141.0 118 62.7
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 9.7e-32 140.6 94 72.3
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 9.7e-32 140.6 143 51.7
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 1.3e-31 140.2 146 69.2
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.1e-30 137.1 125 76.8
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 9.1e-30 134.0 143 51.0
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 1.6e-29 133.3 143 49.0
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.0e-29 132.9 122 57.4
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.7e-29 132.5 121 77.7
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 3.5e-29 132.1 174 57.5
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 3.5e-29 132.1 174 57.5
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.0e-28 130.6 121 76.9
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.3e-28 130.2 121 76.9
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.7e-28 129.8 118 73.7
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.9e-28 129.0 146 59.6
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 3.8e-28 128.6 146 62.3
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-27 127.1 146 58.9
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.5e-27 126.7 146 63.0
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.9e-27 126.3 121 75.2
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 1.2e-26 123.6 122 54.1
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 1.6e-26 123.2 121 74.4
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 3.6e-26 122.1 121 75.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 3.4e-24 115.5 133 65.4
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.8e-22 109.8 113 71.7
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 5.4e-22 108.2 121 68.6
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 7.0e-22 107.8 119 48.7
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 1.5e-19 100.1 99 59.6
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 3.0e-17 92.4 139 56.1
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 8.9e-17 90.9 138 55.1
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.3e-15 84.3 121 60.3
Pp3c8_15890 Physcomitrium patens HOM05D004700 ORTHO05D005576 9.2e-14 80.9 143 34.3
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 3.7e-07 58.9 67 44.8
Zm00001eb337320 Zea mays HOM05D004700 ORTHO05D005576 2.4e-06 56.2 94 35.1


User provided reference genes

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