Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 5.8e-39 163.7 79 100.0
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 4.2e-21 104.4 103 60.2
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 3.0e-19 98.2 91 54.9
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 8.7e-19 96.7 91 57.1
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.3e-18 94.7 93 54.8
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 5.6e-18 94.0 88 56.8
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 9.6e-18 93.2 96 54.2
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 6.2e-17 90.5 100 53.0
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 6.2e-17 90.5 100 53.0
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 6.2e-17 90.5 92 53.3
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 6.2e-17 90.5 100 50.0
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 1.4e-16 89.4 93 50.5
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 1.8e-16 89.0 85 57.6
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 2.4e-16 88.6 101 51.5
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 2.4e-16 88.6 101 50.5
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 4.0e-16 87.8 85 55.3
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 6.9e-16 87.0 101 50.5
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 9.0e-16 86.7 85 54.1
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 9.0e-16 86.7 101 48.5
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.2e-15 86.3 92 53.3
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 1.2e-15 86.3 84 54.8
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.5e-15 85.9 100 49.0
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.5e-15 85.9 108 48.1
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 2.0e-15 85.5 101 49.5
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.0e-15 85.5 87 50.6
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.6e-15 85.1 85 56.5
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 2.6e-15 85.1 89 53.9
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.6e-15 85.1 88 52.3
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 3.4e-15 84.7 85 55.3
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 3.4e-15 84.7 84 56.0
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 3.4e-15 84.7 101 48.5
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 3.4e-15 84.7 102 48.0
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 4.5e-15 84.3 102 48.0
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 4.5e-15 84.3 103 49.5
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 5.8e-15 84.0 100 49.0
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 7.6e-15 83.6 106 48.1
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 7.6e-15 83.6 85 55.3
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 9.9e-15 83.2 101 49.5
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 9.9e-15 83.2 83 54.2
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 1.3e-14 82.8 92 50.0
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.7e-14 82.4 90 48.9
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 1.7e-14 82.4 103 48.5
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.2e-14 82.0 101 47.5
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 2.2e-14 82.0 94 52.1
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.2e-14 82.0 103 46.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 2.2e-14 82.0 103 46.6
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.9e-14 81.6 101 48.5
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 2.9e-14 81.6 101 46.5
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.8e-14 81.3 86 53.5
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 4.9e-14 80.9 101 46.5
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 4.9e-14 80.9 85 51.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 4.9e-14 80.9 101 49.5
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 6.4e-14 80.5 100 48.0
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 6.4e-14 80.5 100 49.0
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 6.4e-14 80.5 101 48.5
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 8.4e-14 80.1 87 56.3
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 1.1e-13 79.7 103 45.6
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 1.1e-13 79.7 85 50.6
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 1.4e-13 79.3 85 54.1
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 1.9e-13 79.0 111 44.1
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.9e-13 79.0 102 47.1
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 1.9e-13 79.0 100 46.0
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 2.4e-13 78.6 114 46.5
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.4e-13 78.6 103 47.6
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 2.4e-13 78.6 91 49.5
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 3.2e-13 78.2 84 50.0
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 3.2e-13 78.2 94 50.0
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 3.2e-13 78.2 94 48.9
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 3.2e-13 78.2 104 45.2
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 3.2e-13 78.2 100 50.0
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 4.2e-13 77.8 78 55.1
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 4.2e-13 77.8 101 47.5
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 5.4e-13 77.4 84 52.4
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 7.1e-13 77.0 80 52.5
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 1.2e-12 76.3 90 48.9
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 1.2e-12 76.3 102 45.1
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 1.6e-12 75.9 84 52.4
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 2.1e-12 75.5 103 45.6
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 2.1e-12 75.5 109 45.9
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 3.5e-12 74.7 102 45.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 4.6e-12 74.3 89 47.2
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 6.0e-12 73.9 103 44.7
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 7.9e-12 73.6 93 49.5
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 1.3e-11 72.8 107 43.0
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.8e-11 72.4 93 45.2
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 2.3e-11 72.0 79 51.9
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 2.3e-11 72.0 107 43.0
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 8.7e-11 70.1 86 46.5
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 1.5e-10 69.3 92 44.6
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.9e-10 68.9 103 41.7
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.5e-10 68.6 78 52.6
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 3.3e-10 68.2 94 42.6
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 4.3e-10 67.8 103 42.7
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 9.6e-10 66.6 116 39.7
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 9.6e-10 66.6 90 42.2
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 1.6e-09 65.9 104 39.4
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 2.1e-09 65.5 78 51.3
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 2.1e-09 65.5 103 44.7
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 2.1e-09 65.5 86 46.5
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.8e-09 65.1 99 43.4
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 3.7e-09 64.7 77 50.6
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 6.2e-09 63.9 84 46.4
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 8.1e-09 63.5 83 45.8
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.1e-08 63.2 100 42.0
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 1.1e-08 63.2 98 41.8
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 1.8e-08 62.4 100 42.0
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 1.8e-08 62.4 91 41.8
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 1.8e-08 62.4 88 42.0
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 2.4e-08 62.0 102 40.2
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 3.1e-08 61.6 102 40.2
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 4.0e-08 61.2 102 40.2
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 6.9e-08 60.5 95 43.2
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-07 59.7 93 39.8
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.2e-07 59.7 93 39.8
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 3.4e-07 58.2 102 39.2
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 7.6e-07 57.0 104 37.5
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.3e-06 56.2 114 36.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 1.3e-06 56.2 114 36.8
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 1.3e-06 56.2 114 36.8
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.2e-06 55.5 116 34.5
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.2e-06 55.5 116 34.5
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 2.9e-06 55.1 99 39.4
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.8e-06 54.7 106 36.8
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 4.9e-06 54.3 93 37.6


User provided reference genes

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