Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 2.2e-85 319.3 207 100.0
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 3.7e-29 132.5 152 49.3
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 3.2e-28 129.4 152 50.0
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 3.0e-26 122.9 142 49.3
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 4.3e-25 119.0 139 47.5
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 5.6e-25 118.6 122 49.2
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 4.0e-23 112.5 117 49.6
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 2.0e-22 110.2 115 48.7
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 2.6e-22 109.8 122 45.1
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 7.5e-22 108.2 116 48.3
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 1.7e-21 107.1 117 44.4
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 2.9e-21 106.3 122 46.7
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 8.3e-21 104.8 116 44.8
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 7.1e-20 101.7 124 45.2
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 7.1e-20 101.7 118 47.5
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 9.2e-20 101.3 122 41.8
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 1.2e-19 100.9 122 45.1
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 1.2e-19 100.9 92 53.3
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 2.1e-19 100.1 119 44.5
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 7.8e-19 98.2 117 43.6
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 1.7e-18 97.1 156 37.8
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 6.6e-18 95.1 117 43.6
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 8.6e-18 94.7 116 44.0
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 1.1e-17 94.4 87 52.9
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.1e-17 94.4 117 41.9
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.5e-17 94.0 137 41.6
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 1.5e-17 94.0 115 42.6
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.9e-17 93.6 118 42.4
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 3.3e-17 92.8 96 47.9
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 3.3e-17 92.8 114 42.1
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 3.3e-17 92.8 114 42.1
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 4.3e-17 92.4 116 37.9
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 5.6e-17 92.0 107 46.7
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 5.6e-17 92.0 115 43.5
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 1.2e-16 90.9 118 41.5
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 1.6e-16 90.5 128 39.1
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 6.2e-16 88.6 111 45.0
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 6.2e-16 88.6 100 46.0
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 8.1e-16 88.2 96 47.9
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 1.1e-15 87.8 117 41.9
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.4e-15 86.7 86 47.7
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.1e-15 86.3 109 41.3
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 3.1e-15 86.3 92 46.7
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 4.0e-15 85.9 99 44.4
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 5.2e-15 85.5 99 44.4
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 5.2e-15 85.5 99 44.4
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 6.8e-15 85.1 115 40.9
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 8.9e-15 84.7 90 48.9
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 1.2e-14 84.3 109 43.1
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 1.5e-14 84.0 117 37.6
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 2.0e-14 83.6 138 37.7
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 2.0e-14 83.6 115 41.7
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 1.3e-13 80.9 118 38.1
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 2.2e-13 80.1 100 40.0
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 1.4e-12 77.4 96 42.7
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 1.9e-12 77.0 89 48.3
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 2.4e-12 76.6 136 34.6
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 2.4e-12 76.6 94 41.5
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 3.2e-12 76.3 97 46.4
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 3.2e-12 76.3 107 42.1
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 3.2e-12 76.3 106 41.5
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 4.2e-12 75.9 132 37.1
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 4.2e-12 75.9 81 51.9
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 5.4e-12 75.5 95 37.9
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 7.1e-12 75.1 107 36.4
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 7.1e-12 75.1 100 42.0
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 9.2e-12 74.7 96 41.7
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 9.2e-12 74.7 117 39.3
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.2e-11 74.3 65 55.4
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 2.7e-11 73.2 103 39.8
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.5e-11 72.8 103 39.8
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 1.0e-10 71.2 94 39.4
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.0e-10 71.2 94 39.4
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 1.3e-10 70.9 114 36.0
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 1.7e-10 70.5 106 35.8
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 1.7e-10 70.5 92 39.1
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 5.1e-10 68.9 101 37.6
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 8.7e-10 68.2 117 33.3
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 1.1e-09 67.8 73 45.2
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 1.1e-09 67.8 78 44.9
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.9e-09 67.0 86 44.2
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 2.5e-09 66.6 118 35.6
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 2.1e-08 63.5 93 36.6
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 2.1e-08 63.5 92 34.8
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 6.2e-08 62.0 63 49.2
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 6.2e-08 62.0 56 50.0
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 1.1e-07 61.2 99 39.4
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 6.9e-07 58.5 73 43.8
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 2.6e-06 56.6 93 39.8
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 7.6e-06 55.1 106 35.8
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 9.9e-06 54.7 94 35.1


User provided reference genes

Program Settings