Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 8.0e-181 637.1 353 100.0
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.9e-82 309.7 385 56.9
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 9.1e-76 288.1 361 50.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.0e-75 287.0 385 51.4
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 4.5e-75 285.8 391 52.4
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.4e-71 274.2 364 50.3
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 8.8e-71 271.6 366 48.6
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.3e-69 267.7 361 52.4
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-69 267.3 366 46.7
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.7e-69 267.3 366 46.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.3e-68 262.3 363 44.9
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.0e-67 260.4 376 48.7
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 2.2e-66 256.9 397 47.1
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.5e-65 253.4 384 44.0
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 3.2e-65 253.1 388 50.3
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.7e-64 250.0 397 46.1
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.6e-64 249.6 360 45.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 6.1e-64 248.8 377 47.5
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 8.0e-64 248.4 362 45.3
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 2.0e-62 243.8 393 44.3
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 4.4e-62 242.7 263 54.4
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 5.7e-62 242.3 359 45.4
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 9.7e-62 241.5 365 45.5
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.7e-61 240.7 382 46.1
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.7e-61 239.6 381 45.9
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.8e-61 239.2 382 45.8
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 6.3e-61 238.8 382 45.8
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 7.0e-60 235.3 388 45.9
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.7e-59 233.4 382 45.0
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 5.9e-59 232.3 398 44.7
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 7.7e-59 231.9 400 44.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.3e-58 231.1 395 43.8
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.7e-58 230.7 368 45.9
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 3.8e-58 229.6 382 44.8
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 3.8e-58 229.6 394 43.7
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 3.8e-58 229.6 355 44.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.5e-58 228.8 373 46.6
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 8.5e-58 228.4 395 46.6
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.1e-57 228.0 382 40.1
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 7.2e-57 225.3 393 46.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.2e-56 224.6 391 46.3
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.2e-56 224.6 408 40.2
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 2.1e-56 223.8 388 45.1
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 3.6e-56 223.0 360 42.2
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 1.0e-55 221.5 382 43.7
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 2.3e-55 220.3 380 42.6
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 2.3e-55 220.3 380 42.6
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 2.3e-55 220.3 377 43.8
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.3e-55 220.3 385 45.5
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.0e-55 219.5 393 44.8
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 4.0e-55 219.5 375 42.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 5.2e-55 219.2 382 43.2
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 6.8e-55 218.8 366 44.5
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.5e-54 217.6 379 43.3
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.5e-54 217.6 389 42.2
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.5e-54 217.6 378 44.7
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 2.0e-54 217.2 378 44.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.6e-54 216.9 385 46.0
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.6e-54 216.9 392 42.3
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 4.4e-54 216.1 376 45.5
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 9.8e-54 214.9 381 46.7
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 9.8e-54 214.9 383 44.6
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 9.8e-54 214.9 380 43.7
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.2e-53 213.8 363 43.3
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.7e-53 213.0 324 48.1
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 8.3e-53 211.8 339 46.9
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.1e-52 211.5 384 45.8
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 1.4e-52 211.1 379 44.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.8e-52 210.7 381 42.3
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.8e-52 210.7 375 43.2
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 5.9e-51 205.7 346 41.0
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 7.7e-51 205.3 382 43.5
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 7.7e-51 205.3 386 40.7
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.9e-50 203.4 382 43.2
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 3.8e-50 203.0 379 45.1
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 3.8e-50 203.0 382 41.4
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 3.8e-50 203.0 382 40.3
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 5.0e-50 202.6 372 41.4
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 3.2e-49 199.9 382 42.7
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 4.7e-48 196.1 338 45.6
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.3e-47 193.7 326 46.3
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.3e-47 193.7 326 45.7
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 3.0e-47 193.4 361 43.5
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 5.2e-47 192.6 395 42.0
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.2e-47 192.6 326 45.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 8.9e-47 191.8 342 42.7
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 2.6e-46 190.3 385 43.1
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.7e-45 187.6 365 40.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.7e-45 187.6 365 40.0
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.6e-43 181.0 363 43.8
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.7e-43 180.3 367 43.1
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.7e-43 180.3 367 43.1
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 5.9e-43 179.1 380 41.8
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.6e-40 171.0 366 42.1
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.7e-40 169.5 370 41.9
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 1.8e-39 167.5 354 42.9
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.3e-39 167.2 305 38.4
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.0e-39 166.8 315 44.1
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 6.8e-39 165.6 305 38.0
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.2e-37 160.6 368 42.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 2.9e-37 160.2 295 46.4
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.7e-37 159.8 319 43.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.9e-37 159.5 368 42.1
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 8.3e-37 158.7 319 43.3
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.4e-36 157.9 378 38.9
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.8e-36 157.5 384 34.4
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.0e-35 154.1 392 34.2
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 3.0e-34 150.2 360 42.8
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.9e-33 147.5 378 38.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.9e-33 147.5 375 34.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.9e-33 147.5 372 34.1
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 5.6e-33 146.0 368 32.6
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 7.3e-33 145.6 306 40.8
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 2.1e-32 144.1 360 37.2
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 2.1e-32 144.1 334 39.5
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 6.2e-32 142.5 300 39.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.4e-31 141.4 375 34.1
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 7.5e-30 135.6 374 34.5
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 4.9e-29 132.9 198 51.0
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 5.4e-28 129.4 333 33.9
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 7.8e-27 125.6 378 31.2
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 3.9e-26 123.2 375 32.3
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 5.0e-26 122.9 173 54.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.2e-24 118.2 378 31.0
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.6e-24 116.7 360 35.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 8.9e-23 112.1 228 48.2
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.0e-22 110.9 236 46.2
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 4.4e-22 109.8 183 43.7
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 1.7e-21 107.8 373 34.6
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 6.4e-21 105.9 378 30.2
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 1.9e-20 104.4 360 29.7
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.2e-20 103.6 304 34.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 4.1e-20 103.2 319 32.3
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 5.4e-20 102.8 297 36.7
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 7.1e-20 102.4 297 36.7
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.2e-19 101.7 147 55.8
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 4.6e-19 99.8 305 31.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.3e-18 98.2 305 31.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.3e-18 98.2 390 27.4
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.0e-18 97.1 323 31.3
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 7.3e-17 92.4 305 30.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 7.3e-17 92.4 300 32.0
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 7.3e-17 92.4 298 32.6
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 7.3e-17 92.4 305 30.8
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 9.5e-17 92.0 298 32.2
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 1.4e-15 88.2 303 32.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 2.4e-15 87.4 296 31.8
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 2.2e-13 80.9 301 28.9
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 8.4e-13 79.0 367 28.9
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 3.5e-11 73.6 199 35.7
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 8.7e-10 68.9 172 38.4
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 8.7e-10 68.9 172 38.4
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 9.6e-09 65.5 370 26.8
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.4e-07 61.6 297 30.0
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 9.0e-07 58.9 322 28.3
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 4.4e-06 56.6 123 33.3


User provided reference genes

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