Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 8.7e-96 353.6 175 100.0
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.9e-58 229.6 174 62.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 8.8e-56 220.7 174 61.5
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 7.5e-55 217.6 166 64.5
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 3.7e-54 215.3 168 63.7
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 8.3e-54 214.2 173 59.5
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 1.8e-53 213.0 173 57.8
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 2.4e-53 212.6 174 57.5
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 2.4e-53 212.6 173 60.7
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 3.1e-53 212.2 173 61.8
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 7.0e-53 211.1 173 61.3
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 9.1e-53 210.7 173 61.3
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 2.7e-52 209.1 174 60.3
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 4.5e-52 208.4 173 60.1
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 4.5e-52 208.4 174 59.2
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 7.7e-52 207.6 172 57.0
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 1.7e-51 206.5 167 62.3
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.7e-51 206.5 172 56.4
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 1.7e-51 206.5 174 58.6
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 2.2e-51 206.1 174 59.2
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 5.0e-51 204.9 174 60.3
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 8.5e-51 204.1 169 59.8
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 8.5e-51 204.1 174 59.8
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.9e-50 203.0 172 56.4
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 1.9e-50 203.0 169 56.8
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.9e-50 203.0 174 58.0
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 3.2e-50 202.2 174 56.9
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 5.5e-50 201.4 174 58.6
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 7.2e-50 201.1 175 54.9
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 1.6e-49 199.9 174 54.0
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 2.7e-49 199.1 169 58.6
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 3.6e-49 198.7 172 59.3
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 4.7e-49 198.4 173 56.1
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 1.0e-48 197.2 172 56.4
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 1.4e-48 196.8 171 57.9
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 1.4e-48 196.8 174 58.0
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 1.8e-48 196.4 170 57.6
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 4.0e-48 195.3 173 54.3
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 6.8e-48 194.5 175 57.7
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 2.6e-47 192.6 177 55.4
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 4.4e-47 191.8 174 57.5
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 4.4e-47 191.8 174 60.3
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 5.7e-47 191.4 165 57.0
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 5.7e-47 191.4 174 54.6
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 5.7e-47 191.4 174 54.6
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 7.5e-47 191.0 208 49.5
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 7.5e-47 191.0 170 51.2
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 7.5e-47 191.0 175 57.7
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 9.8e-47 190.7 172 57.6
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 2.2e-46 189.5 186 54.8
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 3.7e-46 188.7 170 52.9
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 8.3e-46 187.6 173 52.6
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 1.1e-45 187.2 181 54.1
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 1.4e-45 186.8 169 55.6
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 3.1e-45 185.7 176 54.5
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 3.1e-45 185.7 177 54.2
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 5.4e-45 184.9 167 53.9
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 1.2e-44 183.7 169 52.7
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 1.2e-44 183.7 169 52.7
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 2.0e-44 183.0 168 56.0
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 2.7e-44 182.6 175 53.1
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 5.9e-44 181.4 174 52.3
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 1.0e-43 180.6 176 52.8
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 1.7e-43 179.9 178 52.2
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 6.6e-43 177.9 175 53.7
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 8.6e-43 177.6 178 52.2
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 8.6e-43 177.6 178 52.2
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 1.1e-42 177.2 216 48.6
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 7.2e-42 174.5 191 47.6
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 7.2e-42 174.5 173 52.6
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 1.6e-41 173.3 174 49.4
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 2.1e-41 172.9 169 50.9
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 4.7e-41 171.8 180 49.4
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 4.7e-41 171.8 180 49.4
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 4.7e-41 171.8 164 54.9
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 6.1e-41 171.4 160 54.4
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.8e-40 169.9 174 50.0
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 3.0e-40 169.1 170 54.1
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 5.2e-40 168.3 174 49.4
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 1.2e-39 167.2 179 46.9
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 1.5e-39 166.8 164 52.4
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 3.4e-39 165.6 180 48.3
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 5.7e-39 164.9 191 46.6
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 7.5e-39 164.5 164 51.8
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 9.8e-39 164.1 153 52.9
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 2.2e-38 162.9 168 49.4
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 8.3e-38 161.0 167 49.7
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 1.1e-37 160.6 172 50.0
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 5.9e-36 154.8 113 64.6
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 2.9e-35 152.5 183 45.4
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 1.1e-34 150.6 165 50.3
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 2.5e-34 149.4 171 50.9
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 3.3e-34 149.1 180 47.8
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 5.6e-34 148.3 112 62.5
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 1.2e-33 147.1 85 77.6
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 3.6e-33 145.6 174 50.0
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 3.6e-33 145.6 164 47.6
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 5.2e-32 141.7 161 45.3
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 5.2e-32 141.7 169 46.7
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 1.1e-29 134.0 175 48.6
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 2.4e-29 132.9 85 75.3
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 4.1e-29 132.1 174 40.8
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 2.7e-28 129.4 123 54.5
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 6.0e-28 128.3 175 44.0
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.0e-27 127.5 105 59.0
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 8.6e-27 124.4 75 77.3
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 1.5e-26 123.6 161 44.7
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.2e-23 114.0 68 79.4
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 1.5e-23 113.6 142 44.4
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 2.2e-22 109.8 193 39.4
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 2.2e-22 109.8 193 39.4
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 3.2e-21 105.9 130 46.2
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 4.6e-20 102.1 169 36.1
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.3e-19 100.5 74 60.8
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 2.0e-15 86.7 67 62.7
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 9.9e-15 84.3 98 41.8
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 1.7e-14 83.6 79 57.0
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 6.4e-14 81.6 75 58.7
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 4.1e-13 79.0 148 39.2
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 7.6e-07 58.2 100 34.0


User provided reference genes

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