Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 6.1e-183 644.0 331 100.0
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.2e-106 390.6 344 60.5
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 6.0e-106 388.3 338 61.5
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 3.3e-104 382.5 343 61.8
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 9.6e-104 380.9 342 61.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 1.3e-103 380.6 343 61.5
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.6e-103 380.2 343 62.1
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 2.1e-103 379.8 343 60.9
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 1.8e-102 376.7 349 59.0
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 9.0e-102 374.4 343 59.8
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.5e-101 373.6 343 59.2
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.4e-101 372.5 333 60.7
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 3.4e-101 372.5 343 60.1
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 4.5e-101 372.1 346 59.5
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.2e-100 369.8 346 59.0
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 2.2e-100 369.8 340 61.8
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 2.9e-100 369.4 347 58.8
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.1e-99 367.5 336 59.5
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.1e-99 367.5 343 59.5
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 2.5e-99 366.3 344 58.4
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 7.2e-99 364.8 343 61.2
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 1.6e-98 363.6 354 57.6
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.6e-98 363.6 344 60.5
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 2.1e-98 363.2 343 61.2
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.7e-98 362.8 341 59.2
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 6.1e-98 361.7 343 60.9
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 3.0e-97 359.4 346 60.1
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.0e-97 359.4 343 58.3
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 5.1e-97 358.6 342 59.4
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.9e-96 356.7 343 58.6
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.7e-96 355.1 343 57.7
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 7.4e-96 354.8 343 57.4
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 1.6e-95 353.6 343 58.6
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 2.8e-95 352.8 348 57.5
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 2.8e-95 352.8 343 58.6
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 6.3e-95 351.7 343 58.6
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.1e-94 350.9 339 58.1
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.4e-94 350.5 342 56.1
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.9e-94 348.2 342 55.8
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 6.9e-94 348.2 343 58.0
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.6e-93 346.3 350 58.0
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.5e-93 345.5 342 57.0
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 4.5e-93 345.5 342 55.6
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 5.9e-93 345.1 342 56.7
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 7.7e-93 344.7 347 57.3
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.3e-92 344.0 344 57.6
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.3e-92 344.0 334 58.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 1.3e-92 344.0 389 53.0
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.2e-92 343.2 342 56.4
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.2e-92 343.2 342 56.4
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.9e-92 342.8 342 56.7
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.9e-92 342.8 337 57.9
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.4e-91 340.5 337 55.8
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 1.9e-91 340.1 343 55.1
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.5e-91 339.7 344 57.0
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 9.4e-91 337.8 335 55.8
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 9.4e-91 337.8 343 58.0
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.6e-90 337.0 343 55.1
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.6e-90 337.0 407 51.6
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 2.7e-90 336.3 343 55.1
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.6e-90 335.5 340 55.6
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 6.1e-90 335.1 345 57.4
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 7.9e-90 334.7 339 57.8
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 1.0e-89 334.3 365 54.2
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 3.9e-89 332.4 342 55.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 6.7e-89 331.6 329 55.9
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 8.8e-89 331.3 344 55.2
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.0e-88 330.1 344 54.9
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.5e-88 329.7 344 54.7
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 5.7e-88 328.6 343 54.5
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.3e-87 327.4 344 55.5
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.8e-87 326.2 331 56.8
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 6.3e-87 325.1 333 55.3
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 8.2e-87 324.7 344 56.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 2.4e-86 323.2 340 55.6
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 2.4e-86 323.2 341 54.8
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 3.1e-86 322.8 343 56.0
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 5.3e-86 322.0 326 57.4
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.5e-85 320.5 347 54.2
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 2.0e-85 320.1 343 53.4
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 5.9e-85 318.5 343 54.2
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.0e-84 317.8 347 52.2
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 1.3e-84 317.4 329 56.2
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.7e-84 317.0 330 56.4
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 2.2e-84 316.6 296 60.5
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.2e-84 316.6 348 54.6
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.8e-84 315.8 346 53.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 6.5e-84 315.1 412 47.6
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 8.5e-84 314.7 346 52.9
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 8.5e-84 314.7 388 52.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 2.5e-83 313.2 342 53.2
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 3.2e-83 312.8 344 53.5
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 4.2e-83 312.4 343 53.6
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 5.5e-83 312.0 349 53.6
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 5.5e-83 312.0 344 53.2
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 7.2e-83 311.6 342 53.5
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 2.7e-82 309.7 345 54.2
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.0e-81 307.8 347 51.9
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.0e-81 307.8 345 51.9
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.4e-81 307.4 344 52.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.8e-81 307.0 335 54.3
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.0e-81 306.2 335 54.6
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 5.1e-81 305.4 334 53.0
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 6.7e-81 305.1 347 52.7
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 6.7e-81 305.1 346 53.2
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 6.7e-81 305.1 347 52.4
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 8.8e-81 304.7 343 53.4
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 2.6e-80 303.1 341 52.8
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 1.1e-78 297.7 345 53.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.4e-78 297.4 343 51.9
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 2.4e-78 296.6 342 52.6
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 5.3e-78 295.4 337 53.1
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 7.0e-78 295.0 348 51.7
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 9.1e-78 294.7 333 53.2
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.0e-77 293.5 346 51.4
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.6e-77 293.1 349 49.3
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 2.2e-76 290.0 281 56.6
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 5.0e-76 288.9 348 50.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 8.5e-76 288.1 323 52.0
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 8.5e-76 288.1 323 52.0
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 3.2e-75 286.2 343 51.9
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 4.2e-75 285.8 343 51.9
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 5.5e-75 285.4 337 52.5
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 9.4e-75 284.6 337 51.9
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 9.4e-75 284.6 337 52.5
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.2e-74 284.3 337 52.5
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.1e-74 283.5 317 53.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 2.7e-74 283.1 324 53.1
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 2.7e-74 283.1 324 53.1
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 2.7e-74 283.1 347 50.7
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 3.6e-74 282.7 337 50.1
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 8.0e-74 281.6 326 53.7
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 5.2e-73 278.9 343 50.4
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 5.2e-73 278.9 260 61.2
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 6.7e-73 278.5 342 50.9
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 4.4e-72 275.8 343 50.4
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 9.7e-72 274.6 267 58.1
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 2.2e-71 273.5 348 46.6
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 7.0e-70 268.5 348 46.3
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.0e-69 266.9 278 57.2
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 6.1e-66 255.4 242 59.9
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.0e-57 226.5 331 47.1
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 3.4e-56 223.0 197 63.5
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 8.6e-52 208.4 335 42.4
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 2.9e-47 193.4 251 47.4
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 9.2e-38 161.8 347 35.2
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 6.8e-33 145.6 343 34.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 6.0e-29 132.5 400 30.5
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.9e-28 129.8 250 38.4
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 4.4e-24 116.3 152 44.7
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 3.8e-23 113.2 155 47.1
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.2e-15 87.4 160 35.6
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 2.9e-15 87.0 225 32.0
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.8e-10 70.5 249 28.1
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 1.4e-09 68.2 105 42.9
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 5.3e-09 66.2 139 36.0
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 2.6e-08 63.9 196 33.2
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 1.7e-07 61.2 347 24.2


User provided reference genes

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