Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 3.8e-35 151.0 78 100.0
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 3.6e-33 144.4 78 94.9
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 1.0e-27 126.3 72 86.1
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 2.5e-26 121.7 72 81.9
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 3.6e-25 117.9 72 79.2
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.1e-25 117.1 72 80.6
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.1e-25 117.1 72 80.6
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.1e-25 117.1 72 80.6
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 8.0e-25 116.7 72 77.8
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 8.0e-25 116.7 72 77.8
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 1.0e-24 116.3 72 79.2
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 1.0e-24 116.3 72 77.8
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.0e-24 116.3 72 79.2
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 1.4e-24 115.9 72 77.8
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 1.4e-24 115.9 72 77.8
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 1.4e-24 115.9 72 76.4
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.8e-24 115.5 72 77.8
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 3.0e-24 114.8 72 77.8
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 3.0e-24 114.8 77 74.0
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 5.2e-24 114.0 72 75.0
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 5.2e-24 114.0 71 78.9
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 8.8e-24 113.2 72 76.4
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 8.8e-24 113.2 72 76.4
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 1.2e-23 112.8 72 77.8
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 1.5e-23 112.5 72 73.6
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 1.5e-23 112.5 72 73.6
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 2.0e-23 112.1 72 75.0
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 2.0e-23 112.1 72 77.8
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 2.6e-23 111.7 72 73.6
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 3.4e-23 111.3 72 75.0
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 4.4e-23 110.9 72 73.6
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 5.7e-23 110.5 72 73.6
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 5.7e-23 110.5 72 76.4
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 7.5e-23 110.2 74 71.6
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 9.8e-23 109.8 72 70.8
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 9.8e-23 109.8 72 73.6
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 9.8e-23 109.8 72 73.6
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 9.8e-23 109.8 72 73.6
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.7e-22 109.0 72 72.2
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 1.7e-22 109.0 72 72.2
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 1.7e-22 109.0 72 73.6
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 3.7e-22 107.8 72 72.2
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 3.7e-22 107.8 72 75.0
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 3.7e-22 107.8 72 75.0
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 4.9e-22 107.5 72 75.0
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 6.3e-22 107.1 72 72.2
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 1.4e-21 105.9 66 78.8
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 4.1e-21 104.4 67 76.1
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 4.1e-21 104.4 67 77.6
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 5.4e-21 104.0 68 73.5
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 5.4e-21 104.0 68 73.5
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 7.0e-21 103.6 76 68.4
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 9.1e-21 103.2 67 74.6
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 1.6e-20 102.4 75 72.0
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 1.6e-20 102.4 72 70.8
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 2.7e-20 101.7 72 65.3
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 3.5e-20 101.3 72 66.7
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 4.5e-20 100.9 73 68.5
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 4.5e-20 100.9 70 67.1
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 7.7e-20 100.1 71 69.0
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 1.0e-19 99.8 73 67.1
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 1.0e-19 99.8 67 71.6
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 2.9e-19 98.2 73 65.8
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 2.9e-19 98.2 75 64.0
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 1.1e-18 96.3 72 62.5
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 1.1e-18 96.3 73 63.0
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 1.1e-18 96.3 73 63.0
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 1.5e-18 95.9 73 64.4
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 1.5e-18 95.9 73 63.0
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 1.9e-18 95.5 73 63.0
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 1.9e-18 95.5 70 67.1
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 1.9e-18 95.5 73 63.0
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 1.9e-18 95.5 73 64.4
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 3.3e-18 94.7 70 62.9
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 3.3e-18 94.7 73 61.6
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 3.3e-18 94.7 73 63.0
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 1.2e-17 92.8 73 65.8
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 1.2e-17 92.8 75 62.7
TPR.G25793 Trifolium pratense HOM05D000002 ORTHO05D000001 2.8e-17 91.7 73 65.8
Psat4g101720 Pisum sativum HOM05D007446 ORTHO05D009376 3.6e-17 91.3 72 62.5
Psat4g101880 Pisum sativum HOM05D007446 ORTHO05D009376 3.6e-17 91.3 72 62.5
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 4.7e-17 90.9 76 59.2
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 2.3e-16 88.6 73 64.4
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 3.0e-16 88.2 68 61.8
Medtr8g075290 Medicago truncatula HOM05D007446 ORTHO05D009376 3.0e-16 88.2 73 60.3
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 8.9e-16 86.7 69 62.3
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 8.9e-16 86.7 71 59.2
MELO3C007921.2 Cucumis melo HOM05D007446 ORTHO05D009376 1.2e-15 86.3 55 76.4
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 7.5e-15 83.6 68 58.8
Sed0007439 Sechium edule HOM05D007446 ORTHO05D009376 1.7e-14 82.4 55 72.7
Nitab4.5_0001658g0040 Nicotiana tabacum HOM05D007446 ORTHO05D009376 4.9e-14 80.9 55 72.7
Nitab4.5_0001892g0060 Nicotiana tabacum HOM05D007446 ORTHO05D009376 6.3e-14 80.5 55 72.7
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 3.2e-13 78.2 52 69.2
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 3.2e-13 78.2 54 66.7
Gorai.007G317400 Gossypium raimondii HOM05D007446 ORTHO05D009376 5.4e-13 77.4 66 62.1
Oeu007438.1 Olea europaea HOM05D007446 ORTHO05D009376 1.2e-12 76.3 47 76.6
Gohir.D11G294266 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.6e-12 75.9 68 58.8
Oeu054756.1 Olea europaea HOM05D007446 ORTHO05D009376 2.0e-12 75.5 47 74.5
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 1.3e-11 72.8 53 62.3
Psat0s2733g0120 Pisum sativum HOM05D007446 ORTHO05D009376 1.3e-11 72.8 64 56.2
MD15G1243200 Malus domestica HOM05D007446 ORTHO05D009376 1.7e-11 72.4 47 74.5
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 2.9e-11 71.6 67 52.2
Gohir.A11G174000 Gossypium hirsutum HOM05D007446 ORTHO05D009376 1.5e-10 69.3 47 68.1
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 1.5e-10 69.3 78 46.2
PGSC0003DMG400022557 Solanum tuberosum HOM05D007446 ORTHO05D009376 1.8e-08 62.4 47 68.1
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 5.2e-08 60.8 66 40.9
TAR369G0162 Trochodendron aralioides HOM05D002795 ORTHO05D000638 4.4e-07 57.8 38 68.4


User provided reference genes

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