Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 3.8e-69 264.6 126 100.0
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.5e-36 156.4 126 65.1
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.2e-35 153.3 126 64.3
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 6.2e-35 151.0 126 62.7
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.3e-34 149.1 126 60.3
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.3e-34 149.1 126 60.3
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 2.0e-33 146.0 126 61.1
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 9.9e-33 143.7 117 62.4
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.3e-32 143.3 112 65.2
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 2.2e-32 142.5 112 61.6
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 2.2e-32 142.5 126 59.5
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 2.2e-32 142.5 114 63.2
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 3.7e-32 141.7 125 58.4
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 4.9e-32 141.4 125 58.4
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.1e-31 140.2 112 61.6
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.1e-31 140.2 112 61.6
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 1.9e-31 139.4 119 61.3
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 1.9e-31 139.4 125 57.6
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 3.2e-31 138.7 112 63.4
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 3.2e-31 138.7 112 60.7
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 4.1e-31 138.3 112 62.5
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 4.1e-31 138.3 127 57.5
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 5.4e-31 137.9 126 59.5
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 7.1e-31 137.5 112 60.7
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.1e-31 137.5 112 60.7
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 7.1e-31 137.5 126 59.5
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 9.2e-31 137.1 128 60.2
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 9.2e-31 137.1 112 61.6
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 9.2e-31 137.1 112 61.6
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 9.2e-31 137.1 112 61.6
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 9.2e-31 137.1 128 57.8
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.2e-30 136.7 126 58.7
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.2e-30 136.7 112 60.7
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 1.6e-30 136.3 125 56.8
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.6e-30 136.3 126 60.3
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.6e-30 136.3 126 60.3
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 2.1e-30 136.0 128 58.6
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 2.1e-30 136.0 112 60.7
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 2.1e-30 136.0 112 59.8
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 2.1e-30 136.0 114 61.4
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.1e-30 136.0 126 58.7
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 2.1e-30 136.0 126 58.7
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 2.7e-30 135.6 112 59.8
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 2.7e-30 135.6 127 59.1
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 2.7e-30 135.6 112 62.5
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 2.7e-30 135.6 112 61.6
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 2.7e-30 135.6 112 60.7
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.7e-30 135.6 114 61.4
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.7e-30 135.6 112 59.8
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 3.5e-30 135.2 125 56.0
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 3.5e-30 135.2 114 59.6
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 3.5e-30 135.2 114 61.4
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 3.5e-30 135.2 114 61.4
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 4.6e-30 134.8 123 58.5
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.6e-30 134.8 112 60.7
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 4.6e-30 134.8 128 57.0
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 6.0e-30 134.4 126 57.1
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 6.0e-30 134.4 115 62.6
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 6.0e-30 134.4 112 59.8
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 6.0e-30 134.4 112 59.8
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.0e-30 134.4 126 58.7
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 6.0e-30 134.4 126 58.7
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 6.0e-30 134.4 113 61.1
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 7.8e-30 134.0 126 56.3
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 7.8e-30 134.0 127 56.7
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 7.8e-30 134.0 128 57.0
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 7.8e-30 134.0 112 59.8
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 7.8e-30 134.0 112 59.8
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 1.0e-29 133.7 112 60.7
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 1.0e-29 133.7 112 60.7
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.0e-29 133.7 126 57.9
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 1.0e-29 133.7 112 61.6
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 1.0e-29 133.7 126 57.1
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.3e-29 133.3 126 57.9
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 1.7e-29 132.9 112 61.6
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 1.7e-29 132.9 114 60.5
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.7e-29 132.9 117 59.0
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.3e-29 132.5 126 56.3
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 2.3e-29 132.5 112 60.7
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.3e-29 132.5 114 60.5
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.3e-29 132.5 112 60.7
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.3e-29 132.5 112 60.7
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 2.3e-29 132.5 112 60.7
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 2.3e-29 132.5 112 61.6
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 3.0e-29 132.1 126 56.3
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 3.0e-29 132.1 127 56.7
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 3.9e-29 131.7 113 60.2
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 3.9e-29 131.7 112 59.8
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 3.9e-29 131.7 112 61.6
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 3.9e-29 131.7 115 60.9
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 5.1e-29 131.3 126 55.6
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 5.1e-29 131.3 114 59.6
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 6.6e-29 131.0 112 61.6
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 8.6e-29 130.6 126 56.3
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 8.6e-29 130.6 112 60.7
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 8.6e-29 130.6 126 55.6
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 1.1e-28 130.2 126 55.6
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.1e-28 130.2 115 60.9
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 1.9e-28 129.4 112 59.8
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 1.9e-28 129.4 112 57.1
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 2.5e-28 129.0 126 54.0
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 2.5e-28 129.0 126 56.3
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.5e-28 129.0 112 57.1
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 3.3e-28 128.6 112 58.0
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.3e-28 128.6 126 55.6
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.3e-28 128.6 126 55.6
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 4.3e-28 128.3 126 55.6
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 4.3e-28 128.3 126 55.6
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.3e-28 128.3 126 55.6
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 4.3e-28 128.3 112 60.7
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 5.6e-28 127.9 112 59.8
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 5.6e-28 127.9 112 59.8
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 5.6e-28 127.9 124 54.0
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 1.6e-27 126.3 112 59.8
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 1.6e-27 126.3 112 59.8
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 1.6e-27 126.3 112 59.8
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 1.6e-27 126.3 112 59.8
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 1.6e-27 126.3 112 59.8
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 1.6e-27 126.3 128 54.7
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 2.1e-27 125.9 112 57.1
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 2.8e-27 125.6 126 56.3
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 2.8e-27 125.6 112 58.0
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 3.6e-27 125.2 126 54.0
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 3.6e-27 125.2 112 59.8
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 4.7e-27 124.8 112 57.1
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 4.7e-27 124.8 112 58.9
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 6.2e-27 124.4 112 58.9
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 8.1e-27 124.0 112 59.8
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.1e-26 123.6 128 51.6
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 1.4e-26 123.2 112 56.2
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 1.4e-26 123.2 126 52.4
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 1.4e-26 123.2 126 52.4
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 1.8e-26 122.9 112 55.4
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 2.4e-26 122.5 110 59.1
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 3.1e-26 122.1 112 56.2
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 4.0e-26 121.7 112 56.2
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 8.9e-26 120.6 128 52.3
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 1.2e-25 120.2 129 51.9
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.5e-25 119.8 126 50.0
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 1.5e-25 119.8 110 59.1
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 1.5e-25 119.8 114 57.9
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 2.6e-25 119.0 129 50.4
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 2.6e-25 119.0 129 51.2
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 3.4e-25 118.6 126 52.4
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 4.4e-25 118.2 112 55.4
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 4.4e-25 118.2 112 55.4
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 5.8e-25 117.9 115 53.0
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 5.8e-25 117.9 114 57.0
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 2.9e-24 115.5 109 55.0
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.1e-23 113.6 113 51.3
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.9e-23 112.8 112 51.8
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 2.3e-21 105.9 118 49.2
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 8.7e-21 104.0 126 48.4
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 1.9e-20 102.8 96 56.2
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 4.0e-18 95.1 90 60.0
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 1.2e-14 83.6 45 82.2
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 2.3e-13 79.3 53 64.2
Cpa.g.sc3364.1 Carica papaya HOM05D003561 ORTHO05D004351 5.6e-12 74.7 64 57.8
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.3e-11 73.6 41 80.5
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 8.1e-11 70.9 41 70.7
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 1.1e-10 70.5 63 57.1
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 1.4e-10 70.1 41 73.2
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 1.8e-10 69.7 41 70.7


User provided reference genes

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