Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 0.0e+00 2326.2 1222 100.0
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1221.8 1185 58.9
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 0.0e+00 1181.8 1243 56.2
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 0.0e+00 1170.2 1183 57.1
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1160.2 1186 54.9
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1140.2 1193 54.3
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1131.7 1230 52.8
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1130.2 1243 52.5
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 0.0e+00 1125.5 1108 59.6
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1119.8 1175 54.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1118.6 1190 54.6
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1116.7 1219 53.9
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1115.5 1219 53.9
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1113.2 1230 53.7
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1112.8 1183 54.4
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1107.4 1232 53.2
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1106.7 1220 54.2
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1106.3 1237 53.4
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1105.9 1198 53.6
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1104.0 1228 52.9
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1102.8 1228 54.1
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 0.0e+00 1100.9 1024 61.8
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1095.9 1227 52.1
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1090.1 1198 53.4
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1088.2 1187 53.8
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1083.2 1232 52.5
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1082.8 1223 53.3
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1080.9 1184 52.4
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1079.7 1183 52.2
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1079.3 1291 51.8
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1076.2 1298 50.5
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 2.0e-308 1062.8 1186 51.5
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 2.0e-308 1062.8 1183 52.2
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 2.7e-308 1062.4 1186 51.3
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 1.7e-307 1059.7 1183 51.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 2.9e-307 1058.9 1184 51.3
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 6.5e-307 1057.7 1189 51.1
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 4.2e-306 1055.0 1246 50.5
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 8.0e-305 1050.8 1181 51.0
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 1.2e-303 1047.0 1178 52.0
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 1.4e-301 1040.0 1228 52.0
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 1.7e-299 1033.1 1160 51.7
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 8.6e-299 1030.8 1184 50.3
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 3.3e-298 1028.9 1303 47.7
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 5.6e-298 1028.1 1179 51.3
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 6.8e-296 1021.1 1178 51.0
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 6.8e-296 1021.1 1192 49.4
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 8.9e-296 1020.8 1088 54.6
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 8.9e-296 1020.8 1188 51.1
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 8.3e-294 1014.2 1201 49.0
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 2.4e-293 1012.7 1238 49.0
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 2.4e-293 1012.7 1185 50.9
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 7.0e-293 1011.1 1192 49.2
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 7.8e-292 1007.7 1184 50.8
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 7.8e-292 1007.7 1229 50.9
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 1.3e-291 1006.9 1241 48.0
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 6.6e-291 1004.6 1193 50.2
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.5e-290 1003.4 1185 50.5
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 1.2e-287 993.8 1196 49.7
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 1.6e-284 983.4 1180 50.2
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 1.3e-283 980.3 1196 49.7
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 3.0e-283 979.2 1200 49.8
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.9e-282 976.5 1198 50.1
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 3.4e-279 965.7 1197 48.0
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 9.8e-279 964.1 1227 47.4
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 1.4e-277 960.3 1186 48.1
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 6.8e-272 941.4 1181 48.4
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 6.4e-270 934.9 1018 54.0
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 6.0e-268 928.3 1185 47.2
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 6.0e-268 928.3 1172 47.7
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 3.3e-266 922.5 1189 46.3
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 1.5e-263 913.7 1289 43.6
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 1.3e-257 894.0 1172 46.7
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 5.3e-256 888.6 1239 44.0
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 2.2e-246 856.7 1176 44.9
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 1.9e-245 853.6 1185 46.0
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 3.5e-244 849.4 1189 43.7
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 1.0e-238 831.2 1066 48.1
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 8.4e-238 828.2 757 62.4
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 1.0e-230 804.7 1202 44.8
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 1.7e-230 803.9 1179 41.8
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.9e-229 800.4 1250 41.7
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.0e-227 794.7 1184 43.3
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 2.9e-214 750.0 748 56.4
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 8.5e-198 695.3 983 43.7
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 4.2e-197 693.0 762 53.9
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.7e-193 679.9 1179 40.2
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 4.8e-193 679.5 1059 40.0
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 6.8e-163 579.3 1222 35.4
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.7e-153 548.1 1176 35.6
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 1.5e-146 525.0 616 47.6
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 1.4e-144 518.5 1135 35.5
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 1.3e-134 485.3 1244 33.8
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 2.6e-114 417.9 618 44.8
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 2.2e-84 318.5 396 46.0
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 7.0e-75 287.0 400 41.8
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.8e-73 281.2 516 37.0
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 3.3e-72 278.1 445 43.8
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.3e-68 266.2 1303 27.0
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 7.5e-61 240.4 399 38.6
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.8e-28 131.7 213 41.3
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 7.1e-27 127.5 118 57.6
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 1.3e-25 123.2 127 52.0
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 7.3e-24 117.5 102 54.9
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.6e-23 115.2 86 58.1
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 6.9e-22 110.9 161 42.2
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 4.5e-21 108.2 173 42.8
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 1.9e-19 102.8 67 67.2
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 1.2e-18 100.1 109 54.1
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 7.9e-18 97.4 71 59.2
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 1.5e-16 93.2 309 27.2
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 3.3e-16 92.0 254 29.5
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.5e-13 83.2 84 51.2
Pp3c7_26050 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.3e-09 69.3 74 44.6
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 2.5e-08 65.9 135 31.1


User provided reference genes

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