Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010720 Simmondsia chinensis HOM05D009348 ORTHO05D015627 1.8e-173 612.5 300 100.0
Sc16g0001340 Simmondsia chinensis HOM05D009348 ORTHO05D010856 8.1e-33 145.2 90 82.2
Sc07g0000050 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.1e-28 130.6 90 73.3
Sc12g0005620 Simmondsia chinensis HOM05D009348 ORTHO05D010856 2.5e-18 97.1 64 73.4
Sc20g0000530 Simmondsia chinensis HOM05D013236 ORTHO05D007254 2.8e-17 93.6 134 36.6
Sc04g0007770 Simmondsia chinensis HOM05D013236 ORTHO05D007254 3.6e-17 93.2 105 41.0
Sc19g0003070 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.2e-15 88.2 83 51.8
Sc04g0000500 Simmondsia chinensis HOM05D000704 ORTHO05D000526 1.5e-15 87.8 104 43.3
Sc05g0006150 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.1e-13 81.6 131 34.4
QL09p017510 Quercus lobata HOM05D000003 ORTHO05D000004 3.2e-13 80.1 116 39.7
Sc07g0002650 Simmondsia chinensis HOM05D015356 ORTHO05D007254 3.2e-13 80.1 71 59.2
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.9e-11 73.2 130 33.8
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.7e-11 72.4 129 34.9
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.4e-10 68.9 138 31.9
Sc13g0007780 Simmondsia chinensis HOM05D013953 ORTHO05D016376 7.4e-10 68.9 93 45.2
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.3e-09 68.2 134 33.6
Sc08g0007960 Simmondsia chinensis HOM05D013236 ORTHO05D015627 2.1e-09 67.4 97 41.2
FvH4_5g33581 Fragaria vesca HOM05D008133 ORTHO05D009449 4.8e-09 66.2 132 31.1
Sc13g0005140 Simmondsia chinensis HOM05D000244 ORTHO05D000179 4.8e-09 66.2 63 55.6
Sc18g0006100 Simmondsia chinensis HOM05D013236 ORTHO05D007254 8.1e-09 65.5 78 39.7
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.4e-08 64.7 134 32.1
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.8e-08 64.3 145 31.0
Sc13g0004690 Simmondsia chinensis HOM05D013236 ORTHO05D015627 1.8e-08 64.3 60 48.3
Lj2g0023475 Lotus japonicus HOM05D000003 ORTHO05D007254 2.4e-08 63.9 142 28.9
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 6.9e-08 62.4 140 30.7
Sc05g0003270 Simmondsia chinensis HOM05D015356 ORTHO05D015627 6.9e-08 62.4 56 51.8
Lj3g0000535 Lotus japonicus HOM05D000003 ORTHO05D007254 9.0e-08 62.0 141 32.6
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.0e-07 60.8 135 28.9
Atru.chr2.1933 Acer truncatum HOM05D000003 ORTHO05D000004 3.4e-07 60.1 270 26.3
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 3.4e-07 60.1 94 35.1
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 3.4e-07 60.1 132 27.3
COL.COLO4_04041 Corchorus olitorius HOM05D008133 ORTHO05D007254 5.8e-07 59.3 141 30.5
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 7.6e-07 58.9 138 29.7
Lj1g0005496 Lotus japonicus HOM05D000003 ORTHO05D007254 7.6e-07 58.9 137 30.7
Lj2g0021189 Lotus japonicus HOM05D000003 ORTHO05D000004 9.9e-07 58.5 114 29.8
Sc06g0000370 Simmondsia chinensis HOM05D000113 ORTHO05D004634 9.9e-07 58.5 61 45.9
Sc07g0009340 Simmondsia chinensis HOM05D015356 ORTHO05D015627 1.3e-06 58.2 69 39.1
Sc07g0003940 Simmondsia chinensis HOM05D015356 ORTHO05D015627 1.7e-06 57.8 68 38.2
Prupe.2G216500 Prunus persica HOM05D008133 ORTHO05D009449 2.2e-06 57.4 128 33.6
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 2.9e-06 57.0 139 27.3
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 2.9e-06 57.0 116 31.9
Prupe.1G202000 Prunus persica HOM05D000003 ORTHO05D000004 3.8e-06 56.6 118 29.7
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.8e-06 56.6 106 32.1
Sc21g0002970 Simmondsia chinensis HOM05D013236 ORTHO05D016376 3.8e-06 56.6 47 51.1
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 3.8e-06 56.6 113 36.3
Atru.chr10.8 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 56.2 160 32.5
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 4.9e-06 56.2 151 28.5
Sc18g0006420 Simmondsia chinensis HOM05D001134 ORTHO05D001035 4.9e-06 56.2 76 42.1
Atru.chr10.1454 Acer truncatum HOM05D000003 ORTHO05D000167 6.4e-06 55.8 130 30.8
Atru.chr5.1665 Acer truncatum HOM05D000003 ORTHO05D000167 8.4e-06 55.5 127 31.5


User provided reference genes

Program Settings