Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010690 Simmondsia chinensis HOM05D003564 ORTHO05D389581 7.3e-228 793.5 388 100.0
Sc05g0006130 Simmondsia chinensis HOM05D022636 ORTHO05D388436 2.5e-42 177.2 304 40.5
Sc09g0007340 Simmondsia chinensis HOM05D003564 ORTHO05D389360 7.5e-15 85.9 102 47.1
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 3.2e-13 80.5 76 56.6
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 4.1e-13 80.1 76 55.3
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 4.1e-13 80.1 70 60.0
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 9.2e-13 79.0 70 58.6
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 9.2e-13 79.0 77 53.2
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 9.2e-13 79.0 70 58.6
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 9.2e-13 79.0 70 58.6
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.2e-12 78.6 76 52.6
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.2e-12 78.6 70 57.1
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 1.6e-12 78.2 70 57.1
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 1.6e-12 78.2 69 58.0
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 1.6e-12 78.2 78 52.6
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 2.0e-12 77.8 70 57.1
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 2.0e-12 77.8 76 55.3
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 3.5e-12 77.0 70 55.7
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 3.5e-12 77.0 77 51.9
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 4.6e-12 76.6 63 61.9
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 6.0e-12 76.3 76 52.6
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 6.0e-12 76.3 76 53.9
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 7.8e-12 75.9 85 48.2
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 7.8e-12 75.9 70 54.3
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 7.8e-12 75.9 69 56.5
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 7.8e-12 75.9 69 58.0
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.0e-11 75.5 70 55.7
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.0e-11 75.5 70 54.3
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.3e-11 75.1 70 55.7
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.3e-11 75.1 70 54.3
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 1.7e-11 74.7 61 60.7
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 1.7e-11 74.7 66 57.6
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 1.7e-11 74.7 66 59.1
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 2.3e-11 74.3 76 52.6
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 2.3e-11 74.3 74 54.1
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.3e-11 74.3 66 57.6
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 2.3e-11 74.3 70 54.3
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 3.0e-11 73.9 70 55.7
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 3.0e-11 73.9 77 50.6
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 3.0e-11 73.9 77 50.6
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 3.0e-11 73.9 63 58.7
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 3.0e-11 73.9 76 50.0
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 3.9e-11 73.6 70 54.3
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 3.9e-11 73.6 77 50.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 3.9e-11 73.6 63 60.3
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 3.9e-11 73.6 76 52.6
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 3.9e-11 73.6 61 59.0
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 5.0e-11 73.2 97 42.3
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 5.0e-11 73.2 83 48.2
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 5.0e-11 73.2 70 52.9
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 5.0e-11 73.2 70 52.9
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 5.0e-11 73.2 83 49.4
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.6e-11 72.8 70 54.3
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.6e-11 72.8 70 54.3
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 6.6e-11 72.8 77 49.4
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 8.6e-11 72.4 76 51.3
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 8.6e-11 72.4 61 59.0
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 8.6e-11 72.4 69 55.1
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 1.1e-10 72.0 75 50.7
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 1.1e-10 72.0 75 50.7
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 1.1e-10 72.0 97 42.3
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 1.1e-10 72.0 70 54.3
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.5e-10 71.6 90 43.3
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.5e-10 71.6 63 57.1
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 1.5e-10 71.6 63 58.7
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 1.5e-10 71.6 70 51.4
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 1.5e-10 71.6 63 58.7
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.5e-10 71.6 63 57.1
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 1.5e-10 71.6 70 51.4
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.5e-10 71.6 70 52.9
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 1.9e-10 71.2 70 52.9
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.9e-10 71.2 56 60.7
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.9e-10 71.2 63 58.7
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.9e-10 71.2 70 51.4
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.9e-10 71.2 75 50.7
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 2.5e-10 70.9 70 52.9
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.5e-10 70.9 64 57.8
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 2.5e-10 70.9 81 46.9
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 3.3e-10 70.5 70 52.9
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 3.3e-10 70.5 77 48.1
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 3.3e-10 70.5 77 46.8
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 4.3e-10 70.1 66 54.5
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 4.3e-10 70.1 63 57.1
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 4.3e-10 70.1 63 55.6
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 4.3e-10 70.1 77 46.8
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 5.6e-10 69.7 66 53.0
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 5.6e-10 69.7 77 49.4
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 5.6e-10 69.7 77 49.4
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 5.6e-10 69.7 70 51.4
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 5.6e-10 69.7 77 46.8
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 7.3e-10 69.3 66 53.0
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 7.3e-10 69.3 66 54.5
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 7.3e-10 69.3 69 50.7
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 7.3e-10 69.3 70 51.4
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 7.3e-10 69.3 63 57.1
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 9.5e-10 68.9 71 53.5
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 9.5e-10 68.9 70 50.0
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 1.2e-09 68.6 66 53.0
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 1.2e-09 68.6 66 53.0
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 1.2e-09 68.6 66 53.0
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 1.2e-09 68.6 66 53.0
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 1.2e-09 68.6 66 53.0
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 1.2e-09 68.6 66 51.5
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 1.2e-09 68.6 66 53.0
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.6e-09 68.2 64 57.8
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 1.6e-09 68.2 63 55.6
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 1.6e-09 68.2 63 55.6
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 1.6e-09 68.2 77 46.8
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 1.6e-09 68.2 69 50.7
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 2.1e-09 67.8 54 59.3
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 2.8e-09 67.4 66 51.5
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 2.8e-09 67.4 66 51.5
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.8e-09 67.4 66 53.0
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 2.8e-09 67.4 66 53.0
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 3.6e-09 67.0 66 53.0
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 3.6e-09 67.0 63 52.4
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 4.7e-09 66.6 81 48.1
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 6.2e-09 66.2 63 55.6
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 6.2e-09 66.2 66 50.0
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 6.2e-09 66.2 66 50.0
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 6.2e-09 66.2 43 72.1
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 6.2e-09 66.2 66 51.5
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 8.1e-09 65.9 66 51.5
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 8.1e-09 65.9 66 51.5
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 1.1e-08 65.5 76 46.1
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 1.1e-08 65.5 56 57.1
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 1.4e-08 65.1 67 52.2
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 1.4e-08 65.1 70 47.1
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 1.4e-08 65.1 66 51.5
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 1.4e-08 65.1 66 50.0
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 1.4e-08 65.1 77 48.1
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 1.4e-08 65.1 70 48.6
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.8e-08 64.7 66 48.5
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 1.8e-08 64.7 77 44.2
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 1.8e-08 64.7 63 52.4
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 1.8e-08 64.7 63 52.4
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 1.8e-08 64.7 70 48.6
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 4.0e-08 63.5 43 69.8
Sc16g0004630 Simmondsia chinensis HOM05D022636 ORTHO05D389257 6.8e-08 62.8 62 53.2
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 8.9e-08 62.4 69 47.8
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 8.9e-08 62.4 56 51.8
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.2e-07 62.0 43 65.1
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 1.2e-07 62.0 63 47.6
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 2.0e-07 61.2 63 49.2
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 5.8e-07 59.7 66 43.9
TAR365G0172 Trochodendron aralioides HOM05D003564 ORTHO05D028498 9.8e-07 58.9 41 65.9
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 1.7e-06 58.2 56 50.0
Aqoxy2G02665 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 6.4e-06 56.2 132 36.4
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 6.4e-06 56.2 130 33.1
Sc06g0010930 Simmondsia chinensis HOM05D022636 ORTHO05D388020 8.3e-06 55.8 89 43.8
Sc06g0010980 Simmondsia chinensis HOM05D022636 ORTHO05D388429 8.3e-06 55.8 84 44.0


User provided reference genes

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