Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 9.7e-71 270.0 134 100.0
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.2e-60 236.5 134 87.3
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.9e-60 234.2 132 84.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.0e-56 221.9 132 80.3
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 6.8e-56 220.7 134 79.1
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 3.1e-53 211.8 122 82.8
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.4e-53 211.1 132 75.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 5.4e-53 211.1 134 76.9
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 7.0e-53 210.7 128 80.5
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-52 209.5 130 76.9
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-52 209.5 130 76.9
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.5e-52 208.4 134 72.4
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 4.5e-52 208.0 126 79.4
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 5.9e-52 207.6 134 73.1
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 7.7e-52 207.2 123 79.7
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.3e-51 206.5 134 74.6
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.9e-51 205.3 130 73.8
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 5.0e-51 204.5 134 72.4
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 5.0e-51 204.5 126 77.8
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.1e-50 203.4 131 74.8
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 130 73.8
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.1e-50 203.4 127 77.2
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.5e-50 202.2 122 79.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 4.2e-50 201.4 134 73.1
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.2e-49 199.9 133 73.7
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.6e-49 198.4 134 71.6
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.7e-49 198.0 133 72.9
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 6.1e-49 197.6 127 74.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.0e-49 197.2 126 74.6
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.0e-48 196.8 122 76.2
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.0e-48 196.8 122 76.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.0e-48 196.8 133 71.4
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.0e-48 196.8 127 74.8
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.4e-48 196.4 130 72.3
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.4e-48 196.4 125 75.2
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.4e-48 196.4 134 69.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.4e-48 196.4 132 71.2
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.8e-48 196.1 132 72.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.8e-48 196.1 125 76.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.8e-48 196.1 126 74.6
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.8e-48 196.1 134 69.4
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 2.3e-48 195.7 127 74.0
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.0e-48 195.3 126 75.4
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 5.2e-48 194.5 134 73.1
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.2e-48 194.5 117 78.6
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.2e-48 194.5 126 75.4
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 6.8e-48 194.1 126 76.2
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 6.8e-48 194.1 124 73.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 8.8e-48 193.7 126 76.2
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.2e-47 193.4 123 75.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.0e-47 192.6 134 72.4
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.0e-47 192.6 126 73.0
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 2.6e-47 192.2 128 71.9
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.6e-47 192.2 126 73.8
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.4e-47 191.8 126 73.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 4.4e-47 191.4 118 76.3
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.7e-47 191.0 126 74.6
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 9.8e-47 190.3 127 71.7
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.7e-46 189.5 126 73.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.8e-46 188.7 130 70.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.8e-46 188.7 118 76.3
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.8e-46 188.7 127 70.1
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 4.9e-46 188.0 127 68.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.1e-45 186.8 123 72.4
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.1e-45 186.8 147 61.9
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.4e-45 186.4 126 73.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.4e-45 185.7 126 72.2
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 3.1e-45 185.3 134 65.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 7.0e-45 184.1 119 73.9
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.2e-44 183.3 120 75.0
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.6e-44 183.0 121 72.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 2.7e-44 182.2 121 71.1
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.5e-44 181.4 118 72.0
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 7.7e-44 180.6 117 71.8
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 7.7e-44 180.6 122 70.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.0e-43 180.3 128 66.4
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.3e-43 179.9 117 76.1
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 1.3e-43 179.9 125 67.2
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 2.3e-43 179.1 112 73.2
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.9e-43 178.7 125 63.2
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 5.0e-43 177.9 125 67.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 6.6e-43 177.6 125 65.6
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 6.6e-43 177.6 121 69.4
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.1e-42 176.8 118 70.3
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.1e-42 176.8 125 68.0
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-42 175.3 129 61.2
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 4.2e-42 174.9 125 64.0
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 5.6e-42 174.5 124 66.1
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 5.6e-42 174.5 129 62.0
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.2e-42 174.1 125 66.4
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.2e-41 173.3 131 64.1
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 1.2e-41 173.3 117 70.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-41 172.6 129 62.0
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.6e-41 171.8 125 64.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 4.7e-41 171.4 125 60.0
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.0e-40 168.7 124 61.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 5.2e-40 167.9 130 61.5
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 5.2e-40 167.9 127 62.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 6.8e-40 167.5 125 64.8
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 6.8e-40 167.5 122 65.6
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 8.9e-40 167.2 130 61.5
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 8.9e-40 167.2 124 62.1
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.9e-40 167.2 128 60.9
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.2e-39 166.8 129 57.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.5e-39 166.4 118 63.6
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 2.6e-39 165.6 122 64.8
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 3.4e-39 165.2 130 61.5
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 7.5e-39 164.1 118 64.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.7e-38 162.9 122 63.1
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.9e-38 162.2 122 65.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.7e-38 161.8 105 75.2
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.9e-38 161.4 117 65.0
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 6.4e-38 161.0 116 66.4
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.1e-37 160.2 113 67.3
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.1e-37 160.2 119 62.2
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.1e-37 160.2 128 63.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.4e-37 159.8 123 60.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.4e-37 159.1 120 61.7
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.2e-37 158.7 98 76.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.2e-37 158.7 98 76.5
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 1.6e-36 156.4 128 61.7
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 2.0e-36 156.0 122 61.5
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.7e-36 155.6 118 61.9
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.7e-36 155.6 117 63.2
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 5.9e-36 154.5 118 61.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-35 153.3 121 60.3
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 1.3e-35 153.3 121 60.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.3e-35 152.5 123 59.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.3e-35 152.5 121 59.5
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.3e-35 152.5 121 59.5
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 2.9e-35 152.1 121 60.3
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 3.9e-35 151.8 121 61.2
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 3.9e-35 151.8 121 61.2
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 5.0e-35 151.4 121 59.5
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 5.0e-35 151.4 121 59.5
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 5.0e-35 151.4 121 59.5
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 5.0e-35 151.4 120 58.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 5.0e-35 151.4 117 63.2
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.1e-34 150.2 126 57.1
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.5e-34 149.8 121 59.5
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.5e-34 149.1 108 66.7
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 4.3e-34 148.3 126 56.3
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 4.3e-34 148.3 126 61.1
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 9.5e-34 147.1 113 63.7
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 9.5e-34 147.1 119 57.1
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.8e-33 145.6 126 55.6
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.6e-33 145.2 119 54.6
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.7e-33 144.8 120 55.8
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 8.0e-33 144.1 120 58.3
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.4e-32 143.3 120 57.5
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.3e-32 142.5 120 56.7
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 4.4e-31 138.3 116 55.2
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 6.4e-30 134.4 125 53.6
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.9e-29 132.9 118 55.9
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.2e-29 132.1 107 59.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.0e-29 131.0 120 50.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 1.6e-28 129.8 128 51.6
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 8.9e-24 114.0 80 63.8
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.2e-23 113.6 66 78.8
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.0e-19 99.0 59 78.0
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.1e-18 97.1 66 69.7
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-16 90.5 53 79.2
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.3e-16 89.4 64 70.3
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.1e-16 89.0 64 64.1
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.1e-16 89.0 64 64.1
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.1e-16 89.0 53 71.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.4e-15 85.5 84 57.1
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 5.8e-15 84.7 110 38.2
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 7.6e-15 84.3 65 64.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-14 83.6 60 66.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-14 83.2 59 67.8
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.7e-14 82.0 62 56.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.9e-14 81.6 121 38.0
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.7e-11 73.2 59 61.0
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.1e-10 70.5 96 43.8
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.9e-10 69.7 64 53.1
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.9e-08 60.8 61 44.3
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 4.9e-06 55.1 38 68.4


User provided reference genes

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