Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.1e-259 899.4 452 100.0
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 5.4e-174 614.8 450 68.0
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 6.6e-172 607.8 448 68.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.5e-171 606.7 498 63.7
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.9e-171 606.3 464 67.2
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.6e-170 603.2 451 69.0
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 4.0e-169 598.6 443 68.4
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.0e-169 598.6 446 69.1
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.5e-168 596.7 441 68.3
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 1.5e-168 596.7 451 66.7
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 3.4e-168 595.5 443 68.2
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 1.9e-166 589.7 444 67.3
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 1.9e-166 589.7 453 66.0
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 4.2e-166 588.6 451 66.3
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 7.8e-165 584.3 451 65.2
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 3.0e-164 582.4 442 66.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 6.6e-164 581.3 451 64.7
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 4.3e-163 578.6 450 65.8
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 1.3e-162 577.0 450 66.2
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 1.3e-162 577.0 450 66.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.5e-160 570.1 449 66.1
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.3e-159 567.0 448 65.8
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.3e-159 567.0 448 65.8
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.8e-159 565.5 448 65.6
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 3.8e-159 565.5 451 65.4
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 8.4e-159 564.3 449 64.4
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.1e-158 563.9 449 64.4
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.4e-158 563.5 435 64.4
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.4e-158 563.5 440 65.5
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.9e-158 563.1 435 65.5
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.4e-158 562.8 448 65.4
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.4e-158 562.8 449 64.6
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 5.4e-158 561.6 451 63.2
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 9.3e-158 560.8 431 65.9
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.6e-157 558.5 444 63.3
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 2.3e-156 556.2 444 63.1
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 2.3e-156 556.2 442 63.1
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 3.0e-156 555.8 432 64.8
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 6.7e-156 554.7 429 65.3
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 8.7e-156 554.3 540 54.6
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.5e-155 553.5 450 63.3
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 2.5e-155 552.7 425 65.6
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 3.3e-155 552.4 443 63.0
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 9.6e-155 550.8 437 63.4
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.1e-154 549.7 449 63.9
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 3.7e-154 548.9 425 64.9
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 8.1e-154 547.7 437 63.8
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 8.1e-154 547.7 437 63.2
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-153 547.4 441 63.3
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 1.4e-153 547.0 443 60.9
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 2.4e-153 546.2 451 60.5
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 4.0e-153 545.4 441 63.3
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.5e-152 543.5 434 64.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 2.6e-152 542.7 438 64.6
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 4.5e-152 542.0 450 62.4
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.2e-151 539.7 442 61.8
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 2.9e-151 539.3 427 63.2
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 2.9e-151 539.3 441 60.3
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.4e-150 537.0 451 60.1
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 4.2e-150 535.4 446 62.3
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 5.5e-150 535.0 445 61.8
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 9.3e-150 534.3 449 59.9
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.8e-148 530.0 442 60.2
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 5.1e-148 528.5 446 59.4
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 8.7e-148 527.7 439 59.5
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.1e-147 527.3 452 61.7
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.5e-147 526.9 440 61.6
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 7.4e-147 524.6 435 61.4
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 4.0e-145 518.8 446 59.2
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 1.0e-143 514.2 420 62.6
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 4.9e-143 511.9 420 60.7
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 1.9e-142 510.0 453 56.5
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.2e-141 507.3 437 58.6
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 4.3e-139 498.8 453 58.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 4.3e-139 498.8 450 58.9
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 3.7e-138 495.7 444 59.5
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 8.2e-138 494.6 444 58.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 8.2e-138 494.6 444 58.3
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.8e-137 493.4 443 58.5
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.1e-137 492.7 443 59.1
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 4.1e-137 492.3 445 56.6
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 6.9e-137 491.5 436 56.9
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 2.6e-136 489.6 445 58.7
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 2.6e-136 489.6 443 58.0
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 7.7e-136 488.0 429 58.7
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.0e-135 487.6 443 58.7
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.3e-135 487.3 444 56.5
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 1.7e-135 486.9 425 59.3
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.2e-135 486.5 436 56.4
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 2.9e-135 486.1 448 57.6
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 2.9e-135 486.1 448 57.6
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 3.8e-135 485.7 439 57.6
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 6.5e-135 485.0 448 58.0
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 5.5e-134 481.9 449 58.1
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.2e-133 480.7 449 56.6
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.6e-133 480.3 431 58.0
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 1.0e-132 477.6 445 56.9
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 1.4e-132 477.2 445 56.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 6.7e-132 474.9 445 56.4
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 2.5e-131 473.0 442 55.4
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.3e-131 472.6 434 56.0
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 3.1e-129 466.1 446 55.8
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.2e-128 464.2 445 55.7
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 7.7e-128 461.5 448 54.5
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.9e-127 459.5 448 54.5
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 8.5e-127 458.0 457 55.1
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 1.1e-126 457.6 372 63.4
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.0e-124 451.1 415 56.9
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.0e-124 451.1 444 55.0
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.8e-124 450.3 452 52.2
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 4.4e-123 445.7 457 54.0
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.6e-120 436.4 385 59.0
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.5e-115 420.6 326 63.5
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 2.0e-115 420.2 366 62.8
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 5.3e-113 412.1 425 52.9
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 4.5e-112 409.1 418 55.0
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 5.9e-112 408.7 346 61.8
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 4.2e-110 402.5 306 69.6
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.4e-107 392.5 336 60.1
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 4.4e-107 392.5 442 50.0
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.5e-102 377.5 423 48.9
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.7e-101 373.2 461 48.4
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 3.0e-100 369.8 305 60.3
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 3.4e-99 366.3 428 46.3
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.3e-98 364.4 335 54.9
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 4.9e-90 335.9 301 57.1
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 4.9e-90 335.9 441 43.3
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 6.6e-87 325.5 495 38.8
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 1.6e-80 304.3 213 68.1
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.3e-79 300.4 291 54.0
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 5.2e-76 289.3 254 57.5
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 9.2e-73 278.5 311 47.3
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 2.8e-69 266.9 191 69.1
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 4.9e-66 256.1 493 33.7
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 7.1e-65 252.3 241 60.6
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 7.8e-64 248.8 268 53.0
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 2.9e-50 203.8 196 55.1
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 1.0e-47 195.3 130 72.3
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 6.7e-39 166.0 324 33.0
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 2.0e-35 154.5 422 28.9
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 5.5e-33 146.4 122 61.5
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 3.9e-31 140.2 88 72.7
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 6.2e-29 132.9 234 35.5
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 4.2e-25 120.2 83 63.9
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 2.1e-24 117.9 80 63.8
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 5.9e-19 99.8 124 50.0
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.8e-18 97.1 82 58.5
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 2.1e-16 91.3 66 60.6
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.7e-16 90.9 64 62.5
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.4e-15 88.6 64 60.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.4e-12 78.6 57 70.2
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-10 71.6 46 67.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.3e-07 61.2 66 47.0


User provided reference genes

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