Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 0.0e+00 1303.9 689 100.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 1.2e-228 797.0 698 62.8
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.2e-228 797.0 681 64.6
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.9e-227 792.3 682 63.2
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.1e-226 790.4 678 63.7
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.4e-226 790.0 671 65.1
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.1e-225 786.2 690 62.0
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.3e-224 783.5 686 63.1
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.0e-224 782.3 685 62.3
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.9e-223 779.6 678 62.5
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 3.7e-222 775.4 679 62.3
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 9.0e-221 770.8 680 63.8
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.6e-220 769.2 681 61.7
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.8e-220 768.1 684 61.7
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 7.6e-220 767.7 699 60.2
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.3e-219 766.9 680 61.5
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 1.7e-219 766.5 696 60.9
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.8e-219 765.4 699 60.2
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 1.1e-218 763.8 730 59.5
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 1.1e-218 763.8 699 60.1
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.9e-218 763.1 677 61.9
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 2.7e-217 759.2 672 61.0
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.1e-216 755.0 676 61.5
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.3e-215 752.3 685 60.7
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 1.6e-214 750.0 681 61.4
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.6e-214 750.0 686 60.9
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 2.8e-214 749.2 686 60.5
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 8.2e-214 747.7 704 59.8
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 2.6e-212 742.7 678 59.6
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 3.4e-212 742.3 678 59.9
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 7.6e-212 741.1 676 59.6
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.3e-211 740.3 709 59.2
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 2.9e-211 739.2 673 60.6
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.2e-210 735.7 680 60.4
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 7.2e-210 734.6 678 59.1
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 6.1e-209 731.5 684 59.5
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 1.0e-208 730.7 597 65.2
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.5e-207 726.9 675 58.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.3e-207 725.7 686 59.6
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.6e-206 723.4 675 60.9
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.4e-205 720.3 679 58.8
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 5.3e-205 718.4 719 55.9
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.7e-203 713.4 677 59.4
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 2.9e-203 712.6 675 59.3
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 5.0e-203 711.8 675 58.7
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.4e-202 710.3 683 57.5
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 1.9e-202 709.9 683 57.4
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 2.5e-202 709.5 674 59.3
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 1.6e-201 706.8 690 57.1
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.6e-201 705.7 678 57.8
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 4.6e-201 705.3 676 57.7
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 6.1e-201 704.9 674 57.3
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.8e-200 703.4 680 56.9
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.0e-200 702.6 674 59.2
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 3.9e-200 702.2 679 57.4
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 3.9e-200 702.2 681 57.7
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 6.7e-200 701.4 684 57.9
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.6e-199 699.5 682 57.6
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 5.7e-199 698.4 683 57.1
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 5.7e-199 698.4 679 56.7
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 9.7e-199 697.6 683 57.5
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.7e-198 696.8 678 56.3
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 2.8e-198 696.0 678 56.6
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 3.7e-198 695.7 678 56.6
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 4.8e-198 695.3 685 57.2
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.1e-197 694.1 728 54.1
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.0e-195 687.6 675 58.7
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.0e-195 687.6 687 56.2
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 5.0e-195 685.3 678 55.5
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.4e-194 683.7 679 55.7
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 6.7e-192 674.9 669 57.8
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 7.0e-189 664.8 663 56.3
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.6e-188 663.7 483 68.5
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-187 660.6 651 57.9
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.9e-186 656.8 673 54.5
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.2e-186 656.0 688 53.8
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.3e-184 649.8 601 58.6
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 3.0e-184 649.4 678 54.3
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.2e-180 637.5 698 53.7
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.6e-180 637.1 684 54.2
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 1.3e-179 634.0 603 57.9
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 4.0e-176 622.5 605 57.5
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 4.0e-176 622.5 641 57.3
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 4.8e-174 615.5 681 52.6
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 2.4e-173 613.2 680 51.9
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.4e-168 597.4 618 55.2
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 5.7e-167 592.0 503 62.8
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.5e-162 576.6 677 48.7
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 4.7e-161 572.4 677 47.9
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 3.4e-159 566.2 586 57.2
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 7.0e-157 558.5 711 46.7
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.7e-155 553.9 649 51.5
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 9.8e-151 538.1 705 47.4
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.9e-138 497.3 656 47.1
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 1.4e-128 464.5 607 48.6
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.7e-123 447.6 705 41.3
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 3.3e-122 443.4 520 45.8
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.1e-117 428.3 298 67.1
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 6.0e-116 422.5 703 40.8
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.6e-108 397.9 355 56.6
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 6.9e-104 382.5 280 66.1
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.3e-62 245.4 218 59.2
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.4e-48 198.7 308 47.7
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 6.4e-33 146.7 423 32.4
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.4e-32 143.7 105 65.7
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.8e-31 139.8 100 67.0
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.3e-29 134.0 100 64.0
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-28 131.7 96 64.6
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-19 102.4 110 50.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 5.2e-19 100.5 80 61.2
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 7.1e-16 90.1 332 26.2
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 1.3e-14 85.9 202 38.6
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.5e-13 81.6 47 70.2
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.8e-12 78.2 88 48.9
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.9e-09 67.4 56 60.7
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.2e-07 62.8 180 28.9


User provided reference genes

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