Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.2e-53 211.5 104 100.0
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.1e-25 119.0 117 58.1
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.7e-25 118.2 117 58.1
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.8e-25 117.9 109 56.9
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.3e-24 114.4 109 54.1
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.5e-23 111.3 113 53.1
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 3.2e-21 105.1 117 49.6
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 7.9e-20 100.5 101 52.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.8e-19 99.4 109 53.2
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 8.7e-19 97.1 102 49.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 8.7e-19 97.1 93 55.9
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 2.5e-18 95.5 103 50.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.5e-18 95.5 110 52.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 7.4e-18 94.0 110 51.8
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 7.4e-18 94.0 92 52.2
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 9.7e-18 93.6 88 55.7
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 9.7e-18 93.6 109 49.5
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.3e-17 93.2 93 54.8
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 2.2e-17 92.4 88 53.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.7e-17 91.7 98 51.0
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.7e-17 91.7 103 50.5
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.7e-17 91.7 103 49.5
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.7e-17 91.7 106 48.1
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.8e-17 91.3 94 51.1
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 6.3e-17 90.9 95 51.6
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 6.3e-17 90.9 93 53.8
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 6.3e-17 90.9 93 53.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.2e-17 90.5 97 49.5
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.2e-17 90.5 97 49.5
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 8.2e-17 90.5 95 49.5
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.4e-16 89.7 111 44.1
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.8e-16 89.4 109 47.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-16 89.4 90 50.0
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 1.8e-16 89.4 88 51.1
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.4e-16 89.0 104 50.0
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.4e-16 89.0 104 50.0
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.1e-16 88.6 108 46.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.1e-16 88.6 105 47.6
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 4.1e-16 88.2 106 46.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 5.3e-16 87.8 91 48.4
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 5.3e-16 87.8 94 51.1
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 6.9e-16 87.4 96 50.0
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 9.0e-16 87.0 87 49.4
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 9.0e-16 87.0 93 48.4
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.5e-15 86.3 107 46.7
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.0e-15 85.9 123 43.9
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-15 85.5 106 45.3
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-15 85.5 106 45.3
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 2.6e-15 85.5 109 45.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 2.6e-15 85.5 104 45.2
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.4e-15 85.1 106 46.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 4.5e-15 84.7 99 46.5
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 4.5e-15 84.7 108 49.1
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.5e-15 84.7 111 43.2
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.9e-15 84.3 106 45.3
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 5.9e-15 84.3 107 49.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 7.7e-15 84.0 106 45.3
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.0e-14 83.6 59 66.1
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.0e-14 83.6 89 51.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.0e-14 83.6 107 45.8
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.0e-14 83.6 111 45.9
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.0e-14 83.6 114 46.5
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.2e-14 82.4 108 46.3
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.2e-14 82.4 108 46.3
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.2e-14 82.4 96 44.8
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 2.9e-14 82.0 90 45.6
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 3.8e-14 81.6 108 42.6
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 5.0e-14 81.3 103 44.7
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 6.5e-14 80.9 92 50.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 8.5e-14 80.5 109 41.3
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 8.5e-14 80.5 60 58.3
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.1e-13 80.1 108 42.6
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.1e-13 80.1 93 45.2
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.4e-13 79.7 91 51.6
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-13 79.7 94 46.8
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-13 79.7 94 46.8
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.4e-13 79.7 94 46.8
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.4e-13 79.7 110 40.9
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.9e-13 79.3 96 49.0
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.9e-13 79.3 97 48.5
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 2.5e-13 79.0 89 49.4
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.2e-13 78.6 102 43.1
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 4.2e-13 78.2 115 43.5
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 4.2e-13 78.2 94 45.7
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 9.4e-13 77.0 95 46.3
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-12 76.6 101 43.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.6e-12 76.3 88 45.5
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.1e-12 75.9 107 46.7
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 2.1e-12 75.9 107 40.2
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.7e-12 75.5 97 46.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 4.6e-12 74.7 94 42.6
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.1e-12 74.3 111 42.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 6.1e-12 74.3 88 46.6
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 6.1e-12 74.3 92 46.7
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 7.9e-12 73.9 91 47.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 7.9e-12 73.9 96 45.8
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 7.9e-12 73.9 87 44.8
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.0e-11 73.6 104 40.4
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.0e-11 73.6 88 47.7
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.0e-11 73.6 93 50.5
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.0e-11 73.6 86 44.2
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.8e-11 72.8 88 44.3
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.3e-11 72.4 98 44.9
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.3e-11 72.4 105 38.1
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 3.9e-11 71.6 110 40.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 8.8e-11 70.5 104 40.4
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.0e-10 69.3 92 40.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.0e-10 69.3 110 39.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.0e-10 69.3 93 40.9
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 2.5e-10 68.9 104 39.4
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 2.5e-10 68.9 104 39.4
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.5e-10 68.9 94 46.8
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 3.3e-10 68.6 88 38.6
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.3e-10 68.6 104 40.4
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 4.3e-10 68.2 89 42.7
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 5.7e-10 67.8 104 38.5
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 5.7e-10 67.8 104 38.5
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 5.7e-10 67.8 99 39.4
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.4e-10 67.4 104 41.3
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 7.4e-10 67.4 108 38.0
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 7.4e-10 67.4 108 38.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.7e-09 66.2 104 37.5
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.7e-09 66.2 106 38.7
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.2e-09 65.9 104 40.4
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-09 65.9 104 37.5
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.8e-09 65.5 104 38.5
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.7e-09 65.1 95 37.9
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 4.8e-09 64.7 104 36.5
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 6.3e-09 64.3 112 36.6
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.1e-08 63.5 87 44.8
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 1.8e-08 62.8 97 41.2
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.8e-08 62.8 105 41.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 3.1e-08 62.0 111 36.9
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 4.1e-08 61.6 50 52.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.1e-08 61.6 105 41.9
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 6.9e-08 60.8 115 41.7
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.2e-07 60.1 104 36.5
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.5e-07 59.7 111 36.9
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 3.4e-07 58.5 106 39.6
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 4.5e-07 58.2 90 40.0
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 5.0e-06 54.7 93 38.7


User provided reference genes

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