Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.2e-285 984.9 494 100.0
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 4.4e-169 598.6 459 64.5
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 3.1e-167 592.4 506 60.3
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 8.9e-162 574.3 457 62.6
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 7.5e-161 571.2 527 56.4
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 6.0e-158 561.6 500 59.4
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 3.9e-157 558.9 473 60.5
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 6.6e-157 558.1 480 60.0
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 1.1e-156 557.4 498 58.4
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.9e-156 556.6 434 64.5
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.5e-156 556.2 498 57.2
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.1e-155 553.1 501 57.7
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 3.6e-155 552.4 517 56.7
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.5e-153 547.0 460 61.3
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.5e-153 547.0 496 57.3
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 2.0e-153 546.6 496 57.9
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 7.5e-153 544.7 507 57.2
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 9.8e-153 544.3 479 58.5
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.9e-152 542.7 477 60.0
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.7e-152 542.3 458 60.3
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.7e-152 542.3 464 59.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 8.3e-152 541.2 514 55.8
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 3.2e-151 539.3 504 56.7
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 4.6e-150 535.4 507 57.4
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 2.3e-149 533.1 491 56.8
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 3.0e-149 532.7 482 56.6
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.5e-148 530.4 508 53.7
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.5e-148 530.4 486 56.0
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 3.3e-148 529.3 475 57.5
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 4.3e-148 528.9 495 58.0
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-147 527.3 482 56.6
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 1.2e-147 527.3 503 53.5
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 1.6e-147 526.9 444 62.2
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 2.1e-147 526.6 455 60.2
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.8e-147 526.2 473 58.4
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.7e-147 525.4 479 57.6
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.7e-147 525.4 473 58.4
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 4.7e-147 525.4 490 55.9
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 1.1e-146 524.2 507 53.8
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.1e-146 524.2 612 47.9
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.3e-146 523.1 487 56.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 8.9e-146 521.2 480 56.9
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 1.2e-145 520.8 499 54.1
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.6e-145 519.6 498 55.2
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 4.4e-145 518.8 482 55.4
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 9.9e-145 517.7 481 56.3
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 2.9e-144 516.2 473 56.7
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 4.9e-144 515.4 509 54.2
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 1.4e-143 513.8 470 57.7
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 2.4e-143 513.1 496 54.6
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 3.2e-143 512.7 473 57.3
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 9.2e-143 511.1 563 49.7
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 4.6e-142 508.8 494 54.0
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 7.8e-142 508.1 524 53.4
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.0e-141 507.7 516 53.5
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 5.1e-141 505.4 464 55.6
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 6.6e-141 505.0 480 56.5
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 8.6e-141 504.6 480 55.0
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 1.9e-140 503.4 471 57.3
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 2.5e-140 503.1 494 53.4
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 1.2e-139 500.7 480 55.8
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 2.1e-139 500.0 496 54.8
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 2.8e-139 499.6 493 56.0
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 3.6e-139 499.2 478 55.0
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 3.6e-139 499.2 478 55.2
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 3.6e-139 499.2 498 52.8
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 1.4e-138 497.3 480 54.8
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.8e-138 496.9 484 54.3
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 1.8e-138 496.9 480 55.4
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.4e-138 496.5 496 54.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 2.4e-138 496.5 523 52.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.4e-138 496.5 540 51.7
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 3.1e-138 496.1 477 54.9
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 5.2e-138 495.4 443 58.2
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 6.8e-138 495.0 503 52.1
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 2.0e-137 493.4 513 53.2
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.6e-137 493.0 513 52.8
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 3.4e-137 492.7 523 52.2
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 4.4e-137 492.3 485 55.7
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 4.4e-137 492.3 485 54.4
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 5.8e-137 491.9 480 55.8
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 5.8e-137 491.9 537 50.8
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 1.3e-136 490.7 479 56.2
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 2.9e-136 489.6 451 55.9
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 8.4e-136 488.0 536 51.9
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.1e-135 487.6 476 54.4
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.1e-135 487.6 478 54.6
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 1.4e-135 487.3 489 53.0
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.2e-134 484.2 467 53.5
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 4.6e-134 482.3 478 55.4
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 6.0e-134 481.9 501 52.7
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 1.7e-133 480.3 491 52.5
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 2.3e-133 479.9 493 51.9
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 6.6e-133 478.4 485 50.9
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 8.7e-133 478.0 502 50.0
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 9.6e-132 474.6 448 56.2
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 1.6e-131 473.8 491 52.5
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 2.1e-131 473.4 510 50.6
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.1e-131 473.4 473 51.8
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 3.6e-131 472.6 491 52.3
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 1.8e-130 470.3 493 51.7
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 3.1e-130 469.5 491 52.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 2.0e-129 466.8 490 52.0
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.6e-129 466.5 504 51.4
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.4e-129 465.7 504 51.4
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 7.6e-129 464.9 488 51.4
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 7.6e-129 464.9 475 52.4
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 7.6e-129 464.9 574 46.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 9.9e-129 464.5 475 52.2
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.9e-127 460.3 480 51.5
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 3.2e-127 459.5 479 51.4
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 3.0e-125 453.0 494 50.0
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 8.7e-125 451.4 552 46.7
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 1.9e-124 450.3 504 51.4
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 3.3e-124 449.5 485 51.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.6e-123 446.0 481 52.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 1.8e-122 443.7 510 47.5
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.9e-122 441.8 470 51.7
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.7e-120 437.2 379 59.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.9e-120 435.6 504 49.2
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 6.0e-118 428.7 494 47.6
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 3.9e-117 426.0 519 46.6
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 3.9e-117 426.0 527 48.8
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.9e-116 423.7 457 50.3
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 5.6e-116 422.2 477 47.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.2e-115 418.7 409 53.8
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 4.0e-114 416.0 460 49.6
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 5.3e-114 415.6 458 49.1
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 9.0e-114 414.8 474 48.3
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 1.5e-113 414.1 378 58.2
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 6.4e-112 408.7 486 47.7
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 6.4e-112 408.7 498 47.8
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 2.4e-111 406.8 514 45.3
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 2.8e-107 393.3 513 45.2
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 4.9e-104 382.5 476 47.9
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 7.9e-94 348.6 351 51.6
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.3e-91 341.3 497 40.6
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 2.2e-91 340.5 334 50.3
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 1.5e-89 334.3 488 38.9
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.0e-89 334.0 462 40.7
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.6e-89 333.6 462 40.7
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 4.7e-86 322.8 462 40.5
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.3e-83 314.7 479 38.4
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.3e-83 314.7 365 47.4
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 9.4e-79 298.5 289 58.5
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.8e-77 294.3 334 49.1
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.3e-77 293.9 480 40.2
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 5.2e-77 292.7 334 48.5
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.5e-76 291.2 347 45.0
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 4.8e-75 286.2 487 38.2
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.1e-74 285.0 481 38.7
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.0e-73 280.8 455 37.4
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.3e-72 278.1 483 37.5
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 2.1e-70 270.8 324 44.4
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 5.7e-68 262.7 337 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 4.8e-67 259.6 311 44.1
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 3.3e-55 220.3 330 35.2
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 3.6e-30 137.1 100 68.0
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 5.4e-26 123.2 115 56.5
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 4.0e-13 80.5 153 37.3
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 1.3e-11 75.5 161 32.3
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 3.8e-11 73.9 66 57.6
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.6e-09 68.6 96 40.6
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.0e-09 66.6 49 57.1
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.1e-07 62.4 51 60.8
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 4.8e-06 57.0 39 61.5


User provided reference genes

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