Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 4.7e-138 494.6 259 100.0
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 2.6e-88 329.3 259 69.1
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 2.9e-87 325.9 259 63.7
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 6.0e-85 318.2 253 68.8
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 2.3e-84 316.2 259 62.9
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 6.6e-84 314.7 259 63.7
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 6.6e-84 314.7 259 62.5
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 6.6e-84 314.7 259 63.3
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 1.1e-83 313.9 259 64.1
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 1.9e-83 313.2 259 65.3
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 1.3e-82 310.5 259 63.3
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 1.6e-82 310.1 259 64.9
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 1.6e-82 310.1 259 62.5
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 2.8e-82 309.3 260 62.7
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 4.8e-82 308.5 259 64.5
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 4.8e-82 308.5 258 62.4
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 8.1e-82 307.8 259 61.8
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.4e-81 307.0 255 63.5
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.4e-81 307.0 259 63.7
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 1.8e-81 306.6 259 62.5
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 2.4e-81 306.2 260 61.5
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.1e-81 305.8 252 63.1
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 4.0e-81 305.4 260 58.8
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 9.0e-81 304.3 259 63.3
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 1.2e-80 303.9 259 61.0
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 1.5e-80 303.5 260 58.1
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.6e-80 302.8 261 62.1
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 7.6e-80 301.2 259 59.8
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 7.6e-80 301.2 261 62.1
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 9.9e-80 300.8 261 62.1
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 9.9e-80 300.8 257 63.8
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 1.3e-79 300.4 257 60.7
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 1.7e-79 300.1 260 62.7
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 3.8e-79 298.9 259 60.2
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 4.9e-79 298.5 261 62.5
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 6.4e-79 298.1 259 61.4
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 8.4e-79 297.7 264 61.0
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 8.4e-79 297.7 259 62.9
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 8.4e-79 297.7 259 61.8
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 1.1e-78 297.4 264 58.3
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 4.2e-78 295.4 261 59.8
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 9.3e-78 294.3 259 60.6
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 1.6e-77 293.5 259 61.0
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 2.1e-77 293.1 259 58.3
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 3.5e-77 292.4 259 59.1
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.8e-76 290.0 270 59.3
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 1.5e-75 287.0 257 62.3
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 1.9e-75 286.6 259 59.1
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 5.6e-75 285.0 259 58.7
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 7.4e-75 284.6 260 58.8
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 9.6e-75 284.3 260 61.2
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 9.6e-75 284.3 260 61.2
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 9.6e-75 284.3 258 60.5
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 2.8e-74 282.7 266 55.6
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 2.8e-74 282.7 260 56.5
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 4.8e-74 282.0 260 59.6
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 8.1e-74 281.2 259 59.8
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 8.1e-74 281.2 279 55.9
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 1.8e-73 280.0 257 58.8
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 2.4e-73 279.6 260 58.8
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 4.0e-73 278.9 260 60.0
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 4.0e-73 278.9 258 60.1
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 1.2e-72 277.3 266 54.9
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 2.6e-72 276.2 286 54.5
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 5.8e-72 275.0 262 57.6
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 9.9e-72 274.2 261 57.5
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 1.3e-71 273.9 260 58.8
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 2.2e-71 273.1 257 55.6
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 6.4e-71 271.6 258 56.2
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 8.4e-71 271.2 258 56.2
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 8.4e-71 271.2 267 55.4
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 8.4e-71 271.2 261 57.1
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 1.1e-70 270.8 258 56.6
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 4.2e-70 268.9 258 56.2
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 5.5e-70 268.5 259 56.0
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 7.1e-70 268.1 262 56.1
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 9.3e-70 267.7 260 57.7
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 6.0e-69 265.0 267 52.8
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 1.8e-68 263.5 256 55.1
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 6.7e-68 261.5 213 63.8
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 1.6e-66 256.9 256 53.5
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 2.1e-66 256.5 258 54.3
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 3.7e-66 255.8 283 50.5
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 6.2e-66 255.0 283 51.2
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 6.2e-66 255.0 261 55.6
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 5.3e-65 251.9 216 65.7
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 1.7e-63 246.9 260 53.8
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 5.5e-62 241.9 260 50.0
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 1.9e-59 233.4 261 52.9
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.8e-58 229.6 305 45.6
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 2.5e-54 216.5 196 62.8
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 3.2e-54 216.1 257 45.9
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 9.4e-54 214.5 258 46.9
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 2.1e-53 213.4 260 50.8
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 3.6e-53 212.6 260 49.6
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 1.8e-52 210.3 252 46.8
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 1.0e-44 184.5 158 55.7
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 1.8e-44 183.7 163 64.4
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 1.1e-43 181.0 245 44.5
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 3.9e-36 156.0 170 50.0
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 6.1e-29 132.1 273 34.8
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 3.0e-28 129.8 255 35.3
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.8e-26 123.2 155 50.3
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 1.8e-20 104.0 130 51.5
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 2.2e-18 97.1 95 49.5
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.1e-13 80.5 222 29.7
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 2.8e-13 80.1 222 30.2
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 3.0e-12 76.6 64 53.1
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 2.3e-07 60.5 106 40.6
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 2.3e-07 60.5 43 55.8
HPP92_017340 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.9e-07 60.1 120 39.2


User provided reference genes

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