Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0009080 Simmondsia chinensis HOM05D006699 ORTHO05D008399 6.0e-153 544.3 304 100.0
AUR62039018 Chenopodium quinoa HOM05D006699 ORTHO05D008399 2.9e-107 392.5 264 75.8
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 1.1e-106 390.6 264 74.2
Ciclev10015418m.g Citrus clementina HOM05D006699 ORTHO05D008399 1.5e-106 390.2 270 74.1
QL08p041638 Quercus lobata HOM05D006699 ORTHO05D008399 3.6e-105 385.6 265 74.0
QL08p041677 Quercus lobata HOM05D006699 ORTHO05D008399 1.8e-104 383.3 265 73.6
GSVIVG01020707001 Vitis vinifera HOM05D006699 ORTHO05D008399 4.0e-104 382.1 266 72.2
Eucgr.A01914 Eucalyptus grandis HOM05D006699 ORTHO05D008399 3.4e-103 379.0 265 70.2
PGR042G0843 Punica granatum HOM05D006699 ORTHO05D008399 3.4e-103 379.0 265 72.1
COL.COLO4_33580 Corchorus olitorius HOM05D006699 ORTHO05D008399 7.5e-103 377.9 270 70.7
Thecc.01G150500 Theobroma cacao HOM05D006699 ORTHO05D008399 9.8e-103 377.5 265 71.7
TWI59G0496 Tripterygium wilfordii HOM05D006699 ORTHO05D008399 5.4e-101 371.7 265 70.9
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 1.2e-100 370.5 264 71.2
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.6e-100 370.2 265 69.8
EL10Ac2g03349 Beta vulgaris HOM05D006699 ORTHO05D008399 1.3e-99 367.1 266 70.3
Gohir.A12G086400 Gossypium hirsutum HOM05D006699 ORTHO05D008399 2.3e-99 366.3 266 70.7
Gohir.D12G085000 Gossypium hirsutum HOM05D006699 ORTHO05D008399 2.9e-99 365.9 265 70.9
CANSAT64G2599 Cannabis sativa HOM05D006699 ORTHO05D008399 3.9e-99 365.5 265 70.2
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 8.6e-99 364.4 265 69.1
Gorai.008G095400 Gossypium raimondii HOM05D006699 ORTHO05D008399 1.5e-98 363.6 265 70.6
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 7.3e-98 361.3 265 68.7
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 1.2e-97 360.5 265 68.3
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 1.6e-97 360.1 263 66.9
CiPaw.04G132200 Carya illinoinensis HOM05D006699 ORTHO05D008399 6.1e-97 358.2 265 68.7
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 1.0e-96 357.5 265 67.9
ClCG02G017820 Citrullus lanatus HOM05D006699 ORTHO05D008399 1.8e-96 356.7 268 67.5
HanXRQChr17g0557951 Helianthus annuus HOM05D006699 ORTHO05D008399 2.3e-96 356.3 263 67.7
TAR626G0153 Trochodendron aralioides HOM05D006699 ORTHO05D008399 3.1e-96 355.9 298 63.8
CsaV3_6G018450 Cucumis sativus L. HOM05D006699 ORTHO05D008399 8.9e-96 354.4 265 65.7
ECA233G1148 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-95 352.4 264 67.4
AL4G26070 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 4.4e-95 352.1 271 66.8
Glyma.06G277600 Glycine max HOM05D006699 ORTHO05D008399 4.4e-95 352.1 265 67.2
AL4G26150 Arabidopsis lyrata HOM05D006699 ORTHO05D008399 1.3e-94 350.5 271 66.4
C04p60180 Brassica napus HOM05D006699 ORTHO05D008399 1.3e-94 350.5 271 66.1
BolC4t27520H Brassica oleracea HOM05D006699 ORTHO05D008399 1.3e-94 350.5 271 66.1
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 1.3e-94 350.5 268 68.7
Prupe.3G118500 Prunus persica HOM05D006699 ORTHO05D008399 1.3e-94 350.5 265 67.5
Sp4g13510 Schrenkiella parvula HOM05D006699 ORTHO05D008399 1.3e-94 350.5 270 66.7
BraA04t17899Z Brassica rapa HOM05D006699 ORTHO05D008399 1.7e-94 350.1 271 65.7
Thhalv10016897m.g Eutrema salsugineum HOM05D006699 ORTHO05D008399 1.7e-94 350.1 269 66.9
AT2G31040 Arabidopsis thaliana HOM05D006699 ORTHO05D008399 2.2e-94 349.7 271 66.4
A04p23730 Brassica napus HOM05D006699 ORTHO05D008399 2.2e-94 349.7 271 65.3
Lj3g0015335 Lotus japonicus HOM05D006699 ORTHO05D008399 3.7e-94 349.0 267 65.2
Hund07812 Selenicereus undatus HOM05D006699 ORTHO05D008399 3.7e-94 349.0 284 64.8
CDE10G1046 Ceratophyllum demersum HOM05D006699 ORTHO05D008399 6.4e-94 348.2 270 64.8
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 1.1e-93 347.4 265 65.7
CARHR124570 Cardamine hirsuta HOM05D006699 ORTHO05D008399 1.4e-93 347.1 271 66.4
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 1.4e-93 347.1 271 65.7
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 1.4e-93 347.1 281 64.4
Carub.0004s1225 Capsella rubella HOM05D006699 ORTHO05D008399 1.9e-93 346.7 271 66.1
Phvul.011G130500 Phaseolus vulgaris HOM05D006699 ORTHO05D008399 1.9e-93 346.7 265 64.9
Lj1A681T38 Lonicera japonica HOM05D006699 ORTHO05D008399 2.4e-93 346.3 263 65.8
MD09G1238000 Malus domestica HOM05D006699 ORTHO05D008399 2.4e-93 346.3 266 66.9
MD17G1230900 Malus domestica HOM05D006699 ORTHO05D008399 2.4e-93 346.3 268 67.2
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 3.2e-93 345.9 264 65.2
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 7.0e-93 344.7 264 65.5
SGA_v2.0_scaffold9G04816 Striga asiatica HOM05D006699 ORTHO05D008399 6.0e-92 341.7 265 64.5
Psat7g165360 Pisum sativum HOM05D006699 ORTHO05D008399 1.7e-91 340.1 267 62.5
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 6.6e-91 338.2 267 62.9
Lalb_Chr01g0006001 Lupinus albus HOM05D006699 ORTHO05D008399 8.6e-91 337.8 272 64.0
Manes.01G133200 Manihot esculenta HOM05D006699 ORTHO05D008399 8.6e-91 337.8 246 72.4
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 1.1e-90 337.4 267 66.3
unitig_0.g2026 Utricularia gibba HOM05D006699 ORTHO05D008399 1.5e-90 337.0 286 60.1
Solyc12g010870.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 2.5e-90 336.3 260 65.8
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 2.5e-90 336.3 256 66.4
ATR0602G053 Amborella trichopoda HOM05D006699 ORTHO05D008399 4.3e-90 335.5 273 60.8
Medtr4g079850 Medicago truncatula HOM05D006699 ORTHO05D008399 7.3e-90 334.7 264 63.6
Nitab4.5_0001095g0100 Nicotiana tabacum HOM05D006699 ORTHO05D008399 3.6e-89 332.4 265 64.2
FvH4_6g27380 Fragaria vesca HOM05D006699 ORTHO05D008399 8.0e-89 331.3 270 64.4
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.1e-88 330.9 264 64.8
Lsat_1_v5_gn_8_140640 Lactuca sativa HOM05D006699 ORTHO05D008399 1.1e-88 330.9 268 64.9
Migut.M00261 Erythranthe guttata HOM05D006699 ORTHO05D008399 6.8e-88 328.2 263 63.9
RcHm_v2.0_Chr2g0129651 Rosa chinensis HOM05D006699 ORTHO05D008399 1.5e-87 327.0 266 65.0
FAN02G3357 Fragaria x ananassa HOM05D006699 ORTHO05D008399 9.8e-87 324.3 273 63.7
PSO229G0039 Papaver somniferum HOM05D006699 ORTHO05D008399 1.3e-86 323.9 273 59.7
PSO675G3944 Papaver somniferum HOM05D006699 ORTHO05D008399 2.4e-85 319.7 273 59.0
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 2.1e-84 316.6 264 63.3
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 4.6e-84 315.5 263 63.5
FAN14G2123 Fragaria x ananassa HOM05D006699 ORTHO05D008399 6.0e-84 315.1 283 61.1
Solyc07g055050.3 Solanum lycopersicum HOM05D006699 ORTHO05D008399 2.3e-83 313.2 263 62.7
Sed0000889 Sechium edule HOM05D006699 ORTHO05D008399 5.1e-83 312.0 243 64.6
Sopen07g027160 Solanum pennellii HOM05D006699 ORTHO05D008399 5.1e-83 312.0 263 63.1
DCAR_017060 Daucus carota HOM05D006699 ORTHO05D008399 4.3e-82 308.9 264 61.4
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 1.6e-81 307.0 298 58.7
Os01g0673800 Oryza sativa ssp. japonica HOM05D006699 ORTHO05D008399 1.4e-80 303.9 279 57.7
Cc05_g08340 Coffea canephora HOM05D006699 ORTHO05D008399 6.8e-80 301.6 211 71.6
Oeu018752.1 Olea europaea HOM05D006699 ORTHO05D008399 8.9e-80 301.2 234 65.8
Aa31LG1G7380 Aethionema arabicum HOM05D006699 ORTHO05D008399 2.0e-79 300.1 234 65.4
Nitab4.5_0011277g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 5.8e-79 298.5 264 61.7
TPR.G28306 Trifolium pratense HOM05D006699 ORTHO05D008399 3.5e-76 289.3 248 60.5
Nitab4.5_0009754g0010 Nicotiana tabacum HOM05D006699 ORTHO05D008399 6.6e-75 285.0 262 59.2
Lju1655A0G36 Lonicera japonica HOM05D006699 ORTHO05D008399 2.9e-70 269.6 267 54.3
AUR62037610 Chenopodium quinoa HOM05D006426 ORTHO05D008399 4.9e-70 268.9 188 75.0
Sed0016519 Sechium edule HOM05D006699 ORTHO05D008399 6.4e-70 268.5 281 54.4
Aqoxy1G02064 Aquilegia oxysepala HOM05D006699 ORTHO05D008399 6.6e-67 258.5 218 63.8
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 9.6e-66 254.6 263 54.8
MELO3C013567.2 Cucumis melo HOM05D006699 ORTHO05D008399 2.8e-65 253.1 207 64.3
HPP92_009665 Vanilla planifolia HOM05D006699 ORTHO05D008399 8.1e-65 251.5 318 46.5
vmacro12376 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 4.0e-64 249.2 186 67.2
Atru.chr6.2796 Acer truncatum HOM05D006699 ORTHO05D008399 6.4e-62 241.9 187 67.9
Eucgr.K01127 Eucalyptus grandis HOM05D006699 ORTHO05D008399 3.2e-61 239.6 265 53.6
SEGI_23271 Sequoiadendron giganteum HOM05D006699 ORTHO05D008399 7.1e-61 238.4 247 52.2
Ah.01g003530 Amaranthus hybridus HOM05D006426 ORTHO05D007737 1.6e-60 237.3 140 81.4
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 3.5e-60 236.1 273 48.4
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.4e-55 219.5 276 46.0
Zm00001eb360100 Zea mays HOM05D006699 ORTHO05D008399 8.7e-51 204.9 222 52.3
Cpa.g.sc52.174 Carica papaya HOM05D006699 ORTHO05D008399 2.5e-50 203.4 153 67.3
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.6e-47 193.4 242 43.8
SMO014G0045 Selaginella moellendorffii HOM05D006699 ORTHO05D008399 4.9e-46 189.1 281 41.3
Ah.01g003520 Amaranthus hybridus HOM05D006699 ORTHO05D008399 4.8e-25 119.4 68 77.9
vmacro12375 Vaccinium macrocarpon HOM05D006699 ORTHO05D008399 4.1e-24 116.3 81 64.2
Cre01.g049600 Chlamydomonas reinhardtii HOM05D006699 ORTHO05D008399 1.7e-17 94.4 262 27.9
Cc05_g08350 Coffea canephora HOM05D006699 ORTHO05D008399 9.1e-16 88.6 55 81.8
Lsat_1_v5_gn_2_38761 Lactuca sativa HOM05D006699 ORTHO05D008399 4.5e-15 86.3 77 54.5
PRCOL_00001453 Prasinoderma coloniale HOM05D006699 ORTHO05D008399 7.5e-10 68.9 240 31.2
MCO04G044 Micromonas commoda HOM05D006699 ORTHO05D008399 8.2e-09 65.5 161 29.8
Atru.chr6.2795 Acer truncatum HOM05D006699 ORTHO05D008399 3.8e-06 56.6 31 83.9
C03p20440 Brassica napus HOM05D006699 ORTHO05D042655 6.5e-06 55.8 43 67.4
BolC3t14422H Brassica oleracea HOM05D006699 ORTHO05D042655 6.5e-06 55.8 43 67.4


User provided reference genes

Program Settings