Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 1.0e-185 653.3 335 100.0
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.2e-96 357.5 295 63.4
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.3e-95 354.0 295 62.4
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.3e-95 354.0 294 64.3
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 2.8e-95 352.8 291 64.3
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 2.8e-95 352.8 295 62.0
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 3.7e-95 352.4 295 62.4
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 9.2e-94 347.8 295 62.7
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 2.7e-93 346.3 295 62.4
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 3.5e-93 345.9 291 61.9
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 4.5e-93 345.5 301 60.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 5.9e-93 345.1 284 62.7
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.3e-92 344.0 292 61.6
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 1.7e-92 343.6 290 61.4
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 1.5e-91 340.5 315 59.0
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 1.9e-91 340.1 290 62.1
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 3.3e-91 339.3 287 63.1
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.3e-91 339.3 295 60.7
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 7.3e-91 338.2 293 61.4
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 7.3e-91 338.2 282 62.8
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 8.0e-90 334.7 298 61.4
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.0e-89 334.3 314 58.3
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 3.0e-89 332.8 313 58.8
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 4.0e-89 332.4 288 61.8
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 6.8e-89 331.6 332 55.7
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 6.8e-89 331.6 283 59.7
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 2.6e-88 329.7 298 58.1
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 3.4e-88 329.3 299 58.2
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 4.4e-88 328.9 428 47.0
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 7.5e-88 328.2 310 56.1
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.3e-87 327.4 302 56.6
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.4e-87 325.1 298 56.4
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 1.1e-86 324.3 281 60.1
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 7.0e-86 321.6 289 58.8
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 1.6e-85 320.5 314 55.7
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.7e-85 319.7 296 57.8
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 4.6e-85 318.9 282 61.0
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 5.9e-85 318.5 273 62.3
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 5.9e-85 318.5 277 59.2
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.3e-84 317.4 298 58.1
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 1.7e-84 317.0 298 58.1
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.0e-84 316.2 336 53.6
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 6.6e-84 315.1 283 60.1
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.9e-83 313.5 276 60.1
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 2.5e-83 313.2 296 56.8
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 3.3e-83 312.8 306 56.9
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 3.3e-83 312.8 274 59.9
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.3e-83 312.8 286 58.0
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 4.3e-83 312.4 297 58.6
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 7.3e-83 311.6 284 59.9
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.1e-82 310.1 286 58.4
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 3.6e-82 309.3 297 57.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 8.0e-82 308.1 271 59.0
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 2.3e-81 306.6 297 56.9
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 3.1e-81 306.2 301 57.5
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 4.0e-81 305.8 269 58.4
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 5.2e-81 305.4 301 57.1
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 6.8e-81 305.1 274 59.5
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 8.9e-81 304.7 282 59.6
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 4.4e-80 302.4 336 53.9
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 5.8e-80 302.0 296 55.7
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 1.7e-79 300.4 308 55.5
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.7e-79 300.4 329 52.9
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 3.7e-79 299.3 268 59.0
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.2e-77 294.3 292 55.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 2.0e-77 293.5 303 54.1
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 2.0e-77 293.5 296 51.7
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 2.7e-77 293.1 296 54.7
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 3.3e-75 286.2 296 56.1
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 5.6e-75 285.4 289 54.3
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 5.6e-75 285.4 332 51.8
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 7.3e-75 285.0 281 56.2
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 1.2e-74 284.3 291 55.0
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.2e-74 284.3 353 48.2
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.4e-73 280.8 277 55.2
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 5.2e-73 278.9 319 52.7
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.6e-72 276.6 252 59.1
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 3.4e-72 276.2 275 55.3
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 3.7e-71 272.7 311 50.5
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 8.3e-71 271.6 305 53.1
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.4e-70 270.8 324 48.8
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 9.2e-70 268.1 293 50.9
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 1.6e-66 257.3 284 51.8
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 1.4e-65 254.2 288 49.3
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 2.4e-65 253.4 311 44.7
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 3.1e-65 253.1 296 49.0
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.5e-64 250.8 314 47.5
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.7e-63 247.3 272 54.0
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.2e-61 241.1 244 57.0
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.6e-61 240.7 305 47.9
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 3.5e-61 239.6 287 46.7
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 8.1e-58 228.4 292 47.3
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 3.1e-57 226.5 153 74.5
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 4.0e-57 226.1 161 72.7
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 9.0e-57 224.9 211 55.5
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 1.2e-53 214.5 281 44.5
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.6e-53 214.2 153 71.2
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 8.7e-52 208.4 275 43.3
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.6e-50 204.1 129 76.7
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 1.4e-46 191.0 238 49.6
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 3.2e-46 189.9 207 49.3
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.1e-42 177.2 197 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 2.6e-40 170.2 275 37.1
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 4.2e-38 162.9 264 40.5
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 7.1e-38 162.2 102 77.5
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 2.7e-37 160.2 218 45.9
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.1e-35 154.8 102 74.5
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.1e-35 154.8 145 53.8
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 4.3e-35 152.9 284 38.4
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.3e-34 151.4 171 53.2
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 2.8e-34 150.2 200 43.5
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 6.0e-29 132.5 85 74.1
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 6.0e-29 132.5 169 45.0
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 7.9e-29 132.1 99 65.7
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.8e-28 131.0 129 54.3
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 3.0e-28 130.2 81 76.5
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 2.2e-26 124.0 154 45.5
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 3.0e-20 103.6 122 45.1
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.5e-19 100.5 135 44.4
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.3e-18 98.2 75 65.3
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 1.3e-15 88.2 91 54.9
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 5.5e-14 82.8 82 56.1
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 3.7e-10 70.1 54 61.1
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 6.3e-10 69.3 88 45.5
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 9.1e-09 65.5 60 58.3
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.5e-08 64.7 93 38.7
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 2.0e-08 64.3 67 55.2
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 3.4e-08 63.5 148 28.4
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 7.7e-08 62.4 49 61.2
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 2.2e-07 60.8 63 52.4
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 3.8e-07 60.1 54 59.3
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 1.9e-06 57.8 46 63.0
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 5.5e-06 56.2 64 46.9
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 7.2e-06 55.8 42 66.7


User provided reference genes

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