Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 7.1e-220 766.9 377 100.0
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.4e-127 459.5 375 65.1
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 2.1e-118 429.9 372 61.3
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 8.7e-117 424.5 386 58.5
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 7.3e-116 421.4 371 60.9
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.4e-114 416.4 384 59.4
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 2.6e-113 412.9 385 57.7
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 6.4e-112 408.3 385 58.7
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.6e-110 403.7 370 58.9
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 1.7e-109 400.2 370 57.8
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 6.6e-109 398.3 370 58.1
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 2.5e-108 396.4 363 56.7
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 2.5e-108 396.4 368 58.2
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 2.1e-107 393.3 369 56.6
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.8e-107 392.9 368 58.2
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.6e-107 392.5 368 57.6
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 3.6e-107 392.5 372 57.3
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 1.1e-106 391.0 340 61.2
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 1.4e-106 390.6 344 60.8
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 1.8e-106 390.2 369 56.1
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.8e-106 390.2 373 55.8
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.8e-106 390.2 375 56.0
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-106 389.8 372 56.5
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 3.1e-106 389.4 369 57.2
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 1.2e-105 387.5 373 56.6
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.0e-105 386.7 349 59.0
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.0e-105 386.7 373 56.6
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 2.0e-105 386.7 372 54.6
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.4e-105 386.0 371 56.6
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 7.6e-105 384.8 374 56.7
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 9.9e-105 384.4 372 56.5
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 2.2e-104 383.3 369 55.6
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 6.4e-104 381.7 375 55.7
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 8.4e-104 381.3 371 55.8
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.4e-103 380.6 374 55.6
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 2.4e-103 379.8 372 57.3
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 4.2e-103 379.0 369 55.6
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 7.1e-103 378.3 347 58.8
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 7.1e-103 378.3 374 55.1
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 1.2e-102 377.5 374 55.1
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 1.6e-102 377.1 358 57.5
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 1.6e-102 377.1 367 54.8
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 2.1e-102 376.7 379 55.1
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 2.7e-102 376.3 347 57.6
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 1.0e-101 374.4 365 54.0
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 1.3e-101 374.0 375 55.7
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 3.9e-101 372.5 374 55.6
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.5e-100 370.5 365 56.4
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 7.4e-100 368.2 435 48.7
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 9.6e-100 367.9 322 59.0
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.3e-99 367.5 398 52.5
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 1.6e-99 367.1 369 56.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 2.1e-99 366.7 364 54.9
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.8e-99 366.3 372 53.8
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 8.1e-99 364.8 344 57.3
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 2.4e-98 363.2 363 54.3
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 3.1e-98 362.8 368 55.7
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.6e-97 359.8 341 56.3
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.5e-97 359.0 322 57.8
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 4.5e-97 359.0 336 57.1
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 7.6e-97 358.2 322 59.0
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 7.6e-97 358.2 369 54.7
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 1.3e-96 357.5 322 56.8
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 1.7e-96 357.1 330 56.7
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 2.2e-96 356.7 317 58.0
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 2.9e-96 356.3 357 56.0
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 4.9e-96 355.5 373 51.5
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 4.9e-96 355.5 350 56.0
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 6.5e-96 355.1 317 57.1
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.2e-95 352.8 328 57.3
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 7.1e-95 351.7 340 55.9
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 9.3e-95 351.3 319 59.2
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 1.2e-94 350.9 361 54.6
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.6e-94 350.5 360 54.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 1.6e-94 350.5 357 54.9
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 3.5e-94 349.4 322 56.8
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 7.9e-94 348.2 320 57.2
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 1.0e-93 347.8 358 55.3
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.8e-93 347.1 327 56.9
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 1.8e-93 347.1 327 57.2
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 3.0e-93 346.3 376 50.8
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.9e-93 345.9 330 57.3
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 5.1e-93 345.5 328 56.4
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 5.1e-93 345.5 375 50.9
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 5.1e-93 345.5 375 51.2
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 6.7e-93 345.1 327 56.6
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 2.5e-92 343.2 334 53.9
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 4.3e-92 342.4 324 56.8
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 5.7e-92 342.0 313 55.6
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 5.7e-92 342.0 275 62.9
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 7.4e-92 341.7 373 50.9
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 1.8e-90 337.0 381 50.1
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 4.1e-90 335.9 324 54.3
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 5.3e-90 335.5 373 50.9
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 6.9e-90 335.1 335 54.0
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.5e-89 334.0 323 55.7
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 4.5e-89 332.4 373 49.6
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 5.9e-89 332.0 327 55.4
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 5.0e-88 328.9 337 54.3
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 4.6e-86 322.4 274 60.9
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.8e-85 320.5 272 62.9
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 2.3e-85 320.1 342 51.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 8.7e-85 318.2 274 60.6
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 8.7e-85 318.2 280 59.6
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 1.5e-84 317.4 276 59.8
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 6.3e-83 312.0 284 56.0
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.8e-82 310.5 345 52.5
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 2.3e-77 293.5 274 57.7
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 3.9e-77 292.7 287 55.7
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.0e-76 290.4 285 53.3
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 3.3e-76 289.7 328 49.4
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 2.8e-75 286.6 293 56.3
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 1.0e-72 278.1 294 53.1
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 1.4e-66 257.7 264 54.9
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 1.5e-63 247.7 280 48.2
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 5.7e-60 235.7 305 44.9
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 3.7e-59 233.0 281 45.6
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 4.8e-59 232.6 312 44.2
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 8.2e-59 231.9 269 45.4
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 9.4e-55 218.4 191 58.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 8.0e-54 215.3 276 46.7
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 2.6e-52 210.3 242 47.9
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 3.5e-49 199.9 291 40.2
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.2e-43 180.6 171 53.8
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.6e-41 174.5 166 56.0
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 4.9e-27 126.3 136 52.9
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 2.4e-26 124.0 87 70.1
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 1.0e-24 118.6 127 52.8
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 1.7e-24 117.9 102 58.8
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 2.3e-21 107.5 118 50.0
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 2.3e-21 107.5 118 50.0
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 9.2e-18 95.5 170 38.8
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 1.2e-17 95.1 88 54.5
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 7.8e-17 92.4 62 74.2
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 1.1e-13 82.0 86 53.5
Pp3c11_9540 Physcomitrium patens HOM05D005476 ORTHO05D006886 7.8e-09 65.9 98 41.8
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.9e-08 63.5 71 46.5


User provided reference genes

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