Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 2.7e-55 218.4 108 100.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 5.0e-25 117.9 94 62.8
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.6e-23 112.8 88 61.4
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.1e-23 112.5 85 64.7
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.0e-22 110.2 90 64.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.4e-22 109.8 80 66.2
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 5.1e-22 107.8 79 64.6
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 3.3e-21 105.1 81 64.2
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 4.4e-21 104.8 80 61.2
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 7.4e-21 104.0 83 62.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 7.4e-21 104.0 83 62.7
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 7.4e-21 104.0 95 55.8
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 9.7e-21 103.6 79 62.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.3e-20 103.2 82 62.2
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.3e-20 103.2 90 57.8
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.7e-20 102.8 90 60.0
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.7e-20 102.8 82 62.2
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 1.7e-20 102.8 79 62.0
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.7e-20 102.8 79 62.0
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.7e-20 102.8 82 63.4
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 4.8e-20 101.3 82 61.0
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 4.8e-20 101.3 82 61.0
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 6.3e-20 100.9 92 56.5
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 6.3e-20 100.9 94 57.4
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 8.2e-20 100.5 89 59.6
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-19 100.1 80 61.2
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 1.4e-19 99.8 81 61.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.4e-19 99.8 82 62.2
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 1.8e-19 99.4 89 56.2
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 2.4e-19 99.0 83 61.4
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 3.1e-19 98.6 82 61.0
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 3.1e-19 98.6 88 56.8
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.1e-19 98.6 92 57.6
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.1e-19 98.6 79 62.0
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 4.1e-19 98.2 94 53.2
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 5.3e-19 97.8 81 56.8
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 5.3e-19 97.8 81 56.8
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 5.3e-19 97.8 74 62.2
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 5.3e-19 97.8 92 57.6
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 5.3e-19 97.8 80 58.8
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 6.9e-19 97.4 81 56.8
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 9.1e-19 97.1 80 58.8
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.2e-18 96.7 88 53.4
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.5e-18 96.3 86 58.1
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.0e-18 95.9 86 58.1
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 2.0e-18 95.9 70 64.3
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 2.6e-18 95.5 82 58.5
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.4e-18 95.1 89 56.2
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.5e-18 94.7 113 49.6
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 4.5e-18 94.7 90 56.7
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 5.9e-18 94.4 87 56.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 7.7e-18 94.0 68 63.2
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.0e-17 93.6 91 52.7
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.2e-17 92.4 82 57.3
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 3.8e-17 91.7 93 54.8
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.8e-17 91.7 81 58.0
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 3.8e-17 91.7 91 53.8
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 5.0e-17 91.3 87 54.0
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 6.5e-17 90.9 44 88.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 1.4e-16 89.7 76 60.5
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 2.5e-16 89.0 79 59.5
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 5.5e-16 87.8 68 66.2
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.2e-16 87.4 83 54.2
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 9.4e-16 87.0 76 59.2
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 9.4e-16 87.0 69 60.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 9.4e-16 87.0 69 60.9
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 9.4e-16 87.0 85 50.6
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.4e-16 87.0 87 51.7
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.2e-15 86.7 73 57.5
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.2e-15 86.7 69 60.9
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 2.1e-15 85.9 85 54.1
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 2.1e-15 85.9 85 54.1
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 2.1e-15 85.9 85 54.1
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.6e-15 85.1 95 47.4
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 3.6e-15 85.1 93 52.7
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.6e-15 85.1 79 54.4
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.7e-15 84.7 89 52.8
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 4.7e-15 84.7 93 52.7
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 4.7e-15 84.7 84 54.8
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 8.0e-15 84.0 92 52.2
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.0e-14 83.6 76 55.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.0e-14 83.6 90 50.0
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.0e-14 83.6 77 55.8
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 2.3e-14 82.4 88 53.4
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 3.0e-14 82.0 88 45.5
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 3.9e-14 81.6 39 89.7
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 3.9e-14 81.6 39 89.7
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 3.9e-14 81.6 38 89.5
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 3.9e-14 81.6 87 51.7
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 3.9e-14 81.6 37 91.9
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 3.9e-14 81.6 89 44.9
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 8.8e-14 80.5 102 46.1
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 8.8e-14 80.5 91 48.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.8e-14 80.5 90 50.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 8.8e-14 80.5 89 48.3
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.1e-13 80.1 88 51.1
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 1.5e-13 79.7 65 60.0
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 2.0e-13 79.3 38 86.8
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.0e-13 79.3 38 86.8
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 2.0e-13 79.3 38 86.8
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.6e-13 79.0 93 49.5
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.6e-13 79.0 39 82.1
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.6e-13 79.0 39 82.1
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 3.3e-13 78.6 91 51.6
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 3.3e-13 78.6 38 81.6
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 3.3e-13 78.6 88 48.9
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.4e-13 78.2 88 48.9
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 4.4e-13 78.2 38 81.6
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 4.4e-13 78.2 38 84.2
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 9.7e-13 77.0 77 53.2
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.3e-12 76.6 37 83.8
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.3e-12 76.6 76 53.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.3e-12 76.6 67 55.2
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.7e-12 76.3 37 83.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 2.8e-12 75.5 93 48.4
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.8e-12 75.5 88 48.9
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 3.7e-12 75.1 38 78.9
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 6.3e-12 74.3 38 78.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.4e-11 73.2 83 48.2
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 1.4e-11 73.2 87 44.8
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.8e-11 72.8 37 78.4
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.8e-11 72.8 88 43.2
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.4e-11 72.4 37 78.4
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.4e-11 72.4 87 44.8
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.1e-11 71.6 37 75.7
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 5.3e-11 71.2 40 75.0
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 5.3e-11 71.2 66 48.5
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.0e-10 69.3 71 50.7
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 2.2e-09 65.9 88 43.2
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 7.2e-08 60.8 40 62.5
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 7.2e-08 60.8 40 62.5
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 5.2e-06 54.7 41 63.4


User provided reference genes

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