Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.8e-68 262.3 122 100.0
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 9.5e-41 170.2 107 71.0
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 1.6e-40 169.5 126 65.1
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 1.8e-39 166.0 118 64.4
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 4.0e-39 164.9 108 69.4
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.0e-38 162.5 113 69.9
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 2.6e-38 162.2 121 64.5
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 2.6e-38 162.2 107 68.2
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.6e-38 162.2 107 68.2
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 3.4e-38 161.8 107 69.2
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 4.4e-38 161.4 107 68.2
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 4.4e-38 161.4 107 68.2
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 5.8e-38 161.0 107 66.4
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 5.8e-38 161.0 109 70.6
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 7.6e-38 160.6 107 66.4
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 9.9e-38 160.2 107 67.3
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 1.3e-37 159.8 119 63.9
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 1.3e-37 159.8 107 68.2
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 1.7e-37 159.5 108 67.6
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 2.9e-37 158.7 107 69.2
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 2.9e-37 158.7 107 71.0
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 3.7e-37 158.3 119 63.9
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 8.3e-37 157.1 119 60.5
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 1.4e-36 156.4 107 69.2
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 1.9e-36 156.0 114 64.0
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 2.4e-36 155.6 118 61.9
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 4.1e-36 154.8 107 66.4
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 5.4e-36 154.5 118 61.0
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 9.2e-36 153.7 107 65.4
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 2.1e-35 152.5 107 65.4
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 2.7e-35 152.1 112 59.8
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 3.5e-35 151.8 107 65.4
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 4.6e-35 151.4 110 62.7
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 4.6e-35 151.4 107 65.4
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 6.0e-35 151.0 107 64.5
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 7.8e-35 150.6 107 67.3
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 7.8e-35 150.6 107 66.4
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 7.8e-35 150.6 110 63.6
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 1.0e-34 150.2 118 62.7
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 1.0e-34 150.2 110 61.8
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.3e-34 149.8 107 65.4
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 1.3e-34 149.8 107 65.4
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 1.3e-34 149.8 107 63.6
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 1.3e-34 149.8 118 58.5
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 1.7e-34 149.4 118 58.5
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 2.3e-34 149.1 111 64.0
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 3.0e-34 148.7 107 68.2
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 3.0e-34 148.7 120 63.3
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 3.0e-34 148.7 107 63.6
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 3.0e-34 148.7 118 59.3
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 3.9e-34 148.3 107 64.5
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 5.1e-34 147.9 107 64.5
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 8.6e-34 147.1 108 67.6
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 8.6e-34 147.1 110 62.7
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 8.6e-34 147.1 133 57.9
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 1.5e-33 146.4 110 61.8
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 1.5e-33 146.4 107 63.6
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 1.9e-33 146.0 109 65.1
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 2.5e-33 145.6 112 63.4
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 2.5e-33 145.6 107 64.5
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 4.3e-33 144.8 107 61.7
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 5.6e-33 144.4 114 62.3
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 7.3e-33 144.1 114 62.3
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 9.6e-33 143.7 120 58.3
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 1.2e-32 143.3 110 61.8
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 1.6e-32 142.9 119 57.1
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 1.6e-32 142.9 110 62.7
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 2.1e-32 142.5 118 59.3
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 2.8e-32 142.1 108 64.8
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 2.8e-32 142.1 108 62.0
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 3.6e-32 141.7 109 63.3
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 6.2e-32 141.0 107 58.9
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 6.2e-32 141.0 108 62.0
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 1.8e-31 139.4 110 61.8
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 3.1e-31 138.7 116 55.2
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 3.1e-31 138.7 107 63.6
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 5.2e-31 137.9 114 60.5
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 6.8e-31 137.5 107 59.8
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 1.5e-30 136.3 109 57.8
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 2.0e-30 136.0 108 63.0
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 2.6e-30 135.6 107 60.7
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 2.6e-30 135.6 115 60.9
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 2.6e-30 135.6 108 63.0
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 5.8e-30 134.4 108 62.0
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 2.2e-29 132.5 110 61.8
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 2.2e-29 132.5 110 61.8
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 3.8e-29 131.7 97 62.9
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 4.9e-29 131.3 108 62.0
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 5.4e-28 127.9 121 58.7
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 7.1e-28 127.5 134 51.5
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 3.3e-25 118.6 103 53.4
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 7.3e-25 117.5 106 54.7
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 1.3e-24 116.7 159 40.9
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 1.4e-23 113.2 107 53.3
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 2.4e-23 112.5 107 54.2
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.8e-22 107.8 118 48.3
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 2.2e-21 105.9 81 58.0
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.9e-20 102.8 124 45.2
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 5.4e-20 101.3 107 46.7
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 7.1e-20 100.9 118 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 4.6e-19 98.2 103 47.6
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 7.9e-19 97.4 67 67.2
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 3.9e-18 95.1 120 40.8
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 3.9e-18 95.1 112 46.4
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 1.1e-17 93.6 60 68.3
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 2.4e-15 85.9 78 56.4
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 2.7e-11 72.4 108 39.8
CARHR154620 Cardamine hirsuta HOM05D006681 ORTHO05D008338 5.6e-09 64.7 49 61.2
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 1.6e-08 63.2 49 61.2
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.8e-08 61.6 102 36.3


User provided reference genes

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