Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 1.5e-121 439.5 215 100.0
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.2e-100 368.6 211 82.9
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 3.3e-97 358.6 215 78.6
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.3e-97 358.2 213 78.4
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 6.9e-95 350.9 215 78.1
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.6e-94 349.0 215 76.7
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 4.5e-94 348.2 212 77.4
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 7.7e-94 347.4 215 74.9
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 2.2e-93 345.9 215 77.7
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 2.9e-93 345.5 210 76.7
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 8.5e-93 344.0 212 76.4
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 8.5e-93 344.0 212 75.5
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 2.5e-92 342.4 210 77.1
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 3.2e-92 342.0 214 76.6
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 4.2e-92 341.7 215 76.7
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 7.2e-92 340.9 210 76.2
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 9.4e-92 340.5 215 75.8
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 9.4e-92 340.5 210 74.8
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 9.4e-92 340.5 215 76.3
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 9.4e-92 340.5 215 76.3
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 9.4e-92 340.5 210 76.2
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 1.6e-91 339.7 210 75.7
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 2.1e-91 339.3 215 74.4
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 2.1e-91 339.3 213 76.5
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 2.7e-91 339.0 207 76.3
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 2.7e-91 339.0 215 74.4
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 3.6e-91 338.6 215 74.9
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 3.6e-91 338.6 215 74.9
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 1.0e-90 337.0 213 75.1
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 2.3e-90 335.9 213 75.6
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 3.0e-90 335.5 214 75.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 5.1e-90 334.7 213 74.6
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 6.7e-90 334.3 212 74.5
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 6.7e-90 334.3 215 74.9
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 8.8e-90 334.0 215 74.0
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 8.8e-90 334.0 210 74.3
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.1e-89 333.6 215 73.5
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 1.1e-89 333.6 215 74.9
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 1.5e-89 333.2 215 74.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 2.0e-89 332.8 215 74.9
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 2.0e-89 332.8 212 73.6
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 2.6e-89 332.4 211 74.4
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 4.4e-89 331.6 213 76.1
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 4.4e-89 331.6 213 73.2
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 5.7e-89 331.3 211 72.5
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 5.7e-89 331.3 214 72.9
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 5.7e-89 331.3 215 73.5
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 9.7e-89 330.5 210 74.3
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 1.3e-88 330.1 213 73.2
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.2e-88 329.3 211 73.9
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 3.7e-88 328.6 211 72.0
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 4.8e-88 328.2 204 76.5
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 8.2e-88 327.4 210 74.8
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 1.1e-87 327.0 210 73.3
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 1.1e-87 327.0 210 73.3
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.1e-87 327.0 212 72.6
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.1e-87 327.0 215 74.0
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 1.1e-87 327.0 215 71.2
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 1.4e-87 326.6 211 73.0
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 1.4e-87 326.6 213 72.3
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 1.8e-87 326.2 215 72.6
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 3.1e-87 325.5 211 70.6
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 7.0e-87 324.3 211 72.0
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 7.0e-87 324.3 213 72.8
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 7.0e-87 324.3 215 69.8
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.6e-86 322.4 211 70.1
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.6e-86 322.4 211 70.1
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 2.6e-86 322.4 215 71.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 3.5e-86 322.0 215 72.1
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 4.5e-86 321.6 215 71.2
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 5.9e-86 321.2 211 71.1
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 7.7e-86 320.9 236 66.9
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 1.0e-85 320.5 211 69.7
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 1.0e-85 320.5 211 69.7
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 1.7e-85 319.7 211 68.2
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 2.2e-85 319.3 215 67.9
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 2.9e-85 318.9 215 70.7
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 3.8e-85 318.5 215 69.8
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 5.0e-85 318.2 215 70.2
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 6.5e-85 317.8 211 72.5
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 8.5e-85 317.4 215 72.1
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 8.5e-85 317.4 214 70.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.1e-84 317.0 210 72.9
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 1.9e-84 316.2 213 67.1
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.2e-84 315.5 215 70.2
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 4.2e-84 315.1 210 72.9
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 4.2e-84 315.1 215 69.3
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 5.5e-84 314.7 215 70.2
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 7.2e-84 314.3 215 69.3
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 9.4e-84 313.9 215 69.3
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.2e-83 313.5 214 69.6
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.6e-83 313.2 211 68.7
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 2.3e-82 309.3 214 69.2
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 5.2e-82 308.1 214 67.8
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 8.8e-82 307.4 197 71.6
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 8.8e-82 307.4 215 67.9
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 2.0e-81 306.2 213 70.9
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 5.7e-81 304.7 306 52.6
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.3e-80 303.5 281 56.6
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 1.4e-79 300.1 183 79.2
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 2.4e-79 299.3 197 72.1
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 2.7e-78 295.8 201 65.2
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 2.5e-76 289.3 183 74.9
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.6e-75 286.6 211 63.5
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 2.1e-75 286.2 198 67.7
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 2.7e-75 285.8 211 63.5
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 4.7e-75 285.0 214 62.1
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.0e-74 283.9 211 63.0
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.6e-70 270.0 174 74.7
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 3.5e-70 268.9 214 60.7
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 4.2e-68 261.9 210 57.1
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 3.6e-67 258.8 210 57.1
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.0e-66 257.3 174 74.1
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 1.1e-63 247.3 211 56.4
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 1.4e-58 230.3 214 51.4
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.1e-52 210.7 212 48.6
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 8.3e-48 194.5 124 73.4
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 1.7e-45 186.8 124 71.8
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 7.3e-36 154.8 178 46.6
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 2.6e-33 146.4 91 74.7
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 6.4e-32 141.7 109 61.5
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.6e-27 125.9 83 72.3
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 9.6e-20 101.3 65 76.9
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.6e-19 99.4 61 77.0
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.6e-19 99.4 61 77.0
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.2e-17 94.4 162 37.0
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 4.5e-17 92.4 68 61.8
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.2e-16 90.1 134 38.1
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 9.3e-15 84.7 78 59.0
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 1.2e-14 84.3 179 33.0
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.2e-14 84.3 131 37.4
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 4.6e-14 82.4 163 33.7
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 1.8e-13 80.5 128 35.9
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 2.3e-13 80.1 131 35.1
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 3.0e-13 79.7 147 35.4
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 3.9e-13 79.3 147 36.7
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 5.1e-13 79.0 131 35.9
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 6.7e-13 78.6 116 37.1
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 8.7e-13 78.2 135 34.1
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.1e-12 77.8 131 35.9
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.1e-12 77.8 131 35.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 1.1e-12 77.8 147 36.1
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 1.5e-12 77.4 144 34.7
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 1.5e-12 77.4 144 34.7
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 1.5e-12 77.4 152 33.6
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.9e-12 77.0 131 35.1
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 2.5e-12 76.6 147 35.4
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.5e-12 76.6 116 36.2
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 3.3e-12 76.3 131 35.1
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 4.3e-12 75.9 131 35.1
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 4.3e-12 75.9 150 31.3
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 7.4e-12 75.1 116 37.1
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 7.4e-12 75.1 196 30.1
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 9.6e-12 74.7 131 33.6
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 9.6e-12 74.7 166 31.3
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 1.3e-11 74.3 121 33.9
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 1.3e-11 74.3 131 33.6
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.1e-11 73.6 116 36.2
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 2.1e-11 73.6 131 33.6
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 2.1e-11 73.6 116 37.1
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 3.6e-11 72.8 131 33.6
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 3.6e-11 72.8 131 34.4
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 4.8e-11 72.4 182 31.3
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 6.2e-11 72.0 133 33.1
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.8e-10 70.5 115 31.3
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 3.1e-10 69.7 166 31.9
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 4.0e-10 69.3 63 54.0
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 9.0e-10 68.2 180 30.6
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 9.0e-10 68.2 116 33.6
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.0e-09 67.0 111 36.0
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 2.6e-09 66.6 161 28.6
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.2e-08 63.5 203 25.1
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 2.9e-08 63.2 90 36.7
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 3.8e-08 62.8 116 32.8
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 6.4e-08 62.0 82 39.0
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 6.4e-08 62.0 162 29.0
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 1.4e-07 60.8 107 31.8
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.9e-07 60.5 118 33.1
EL10Ac1g01762 Beta vulgaris HOM05D003844 ORTHO05D004534 2.1e-06 57.0 136 30.1
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 3.5e-06 56.2 138 31.9


User provided reference genes

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