Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007890 Simmondsia chinensis HOM05D005682 ORTHO05D007050 0.0e+00 2106.3 1111 100.0
Hund13152 Selenicereus undatus HOM05D005682 ORTHO05D007050 1.8e-279 966.5 1052 48.9
Ah.14g085910 Amaranthus hybridus HOM05D005682 ORTHO05D007050 4.9e-269 931.8 1092 48.1
GSVIVG01010197001 Vitis vinifera HOM05D005682 ORTHO05D007050 1.5e-265 920.2 1121 45.2
AUR62018178 Chenopodium quinoa HOM05D005682 ORTHO05D007050 5.1e-250 868.6 1192 42.2
CiPaw.05G167300 Carya illinoinensis HOM05D005682 ORTHO05D007050 9.7e-249 864.4 1106 44.5
EL10Ac9g20684 Beta vulgaris HOM05D005682 ORTHO05D007050 3.7e-248 862.4 1046 46.1
Actinidia04079 Actinidia chinensis HOM05D005682 ORTHO05D007050 4.3e-241 839.0 1132 42.0
Prupe.1G345800 Prunus persica HOM05D005682 ORTHO05D007050 2.8e-240 836.3 1100 43.3
Potri.007G070400 Populus trichocarpa HOM05D005682 ORTHO05D007050 6.3e-240 835.1 1107 43.5
AUR62038663 Chenopodium quinoa HOM05D005682 ORTHO05D007050 1.5e-238 830.5 1074 44.1
Sabra07G0059000 Salix brachista HOM05D005682 ORTHO05D007050 1.5e-238 830.5 1119 41.9
Haze_11722 Corylus avellana HOM05D005682 ORTHO05D007050 5.0e-237 825.5 1085 43.7
CANSAT64G0530 Cannabis sativa HOM05D005682 ORTHO05D007050 5.5e-236 822.0 1103 43.0
MD13G1007100 Malus domestica HOM05D005682 ORTHO05D007050 1.1e-233 814.3 1136 41.3
TAR622G0093 Trochodendron aralioides HOM05D005682 ORTHO05D007050 1.8e-231 807.0 1083 42.8
Duzib132G1218 Durio zibethinus HOM05D005682 ORTHO05D007050 5.3e-231 805.4 1139 41.8
Nn4g24940 Nelumbo nucifera HOM05D005682 ORTHO05D007050 1.6e-227 793.9 1104 41.8
Duzib052G0545 Durio zibethinus HOM05D005682 ORTHO05D007050 5.2e-226 788.9 1105 41.4
RcHm_v2.0_Chr4g0446491 Rosa chinensis HOM05D005682 ORTHO05D007050 8.8e-226 788.1 1126 40.9
Rhsim09G0074000 Rhododendron simsii HOM05D005682 ORTHO05D007050 2.2e-224 783.5 1122 40.7
VMungo1127G0377 Vigna mungo HOM05D005682 ORTHO05D007050 8.2e-224 781.6 1103 41.8
MSTRG.433 Avicennia marina HOM05D005682 ORTHO05D007050 7.0e-223 778.5 1131 40.1
FAN17G1521 Fragaria x ananassa HOM05D005682 ORTHO05D007050 1.0e-221 774.6 1090 41.7
Oeu033538.1 Olea europaea HOM05D005682 ORTHO05D007050 1.0e-221 774.6 1115 41.3
Glyma.11G102200 Glycine max HOM05D005682 ORTHO05D007050 1.3e-221 774.2 1105 41.0
FvH4_4g36771 Fragaria vesca HOM05D005682 ORTHO05D007050 1.7e-221 773.9 1093 41.2
Gorai.013G070900 Gossypium raimondii HOM05D005682 ORTHO05D007050 2.9e-221 773.1 1107 41.4
Gohir.A13G059600 Gossypium hirsutum HOM05D005682 ORTHO05D007050 1.5e-220 770.8 1100 41.4
Phvul.011G031200 Phaseolus vulgaris HOM05D005682 ORTHO05D007050 5.5e-220 768.8 1134 40.7
Gohir.D13G062400 Gossypium hirsutum HOM05D005682 ORTHO05D007050 7.2e-220 768.5 1103 41.8
DCAR_002567 Daucus carota HOM05D005682 ORTHO05D007050 1.6e-219 767.3 1089 40.1
ClCG09G004600 Citrullus lanatus HOM05D005682 ORTHO05D007050 2.1e-219 766.9 1104 40.2
PSO063G1542 Papaver somniferum HOM05D005682 ORTHO05D007050 3.6e-219 766.1 1133 40.0
MELO3C023602.2 Cucumis melo HOM05D005682 ORTHO05D007050 4.7e-219 765.8 1140 39.5
ECA246G2025 Erigeron canadensis HOM05D005682 ORTHO05D007050 1.4e-218 764.2 1098 40.6
FAN07G1253 Fragaria x ananassa HOM05D005682 ORTHO05D007050 3.0e-218 763.1 1093 41.8
Sed0007950 Sechium edule HOM05D005682 ORTHO05D007050 5.2e-218 762.3 1096 40.2
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 2.0e-217 760.4 1080 40.8
Lj3g0015709 Lotus japonicus HOM05D005682 ORTHO05D007050 2.2e-216 756.9 1106 41.3
Lj6A721G56 Lonicera japonica HOM05D005682 ORTHO05D007050 4.8e-216 755.7 1141 40.0
Migut.L00859 Erythranthe guttata HOM05D005682 ORTHO05D007050 2.4e-215 753.4 1117 39.8
TWI74G0147 Tripterygium wilfordii HOM05D005682 ORTHO05D007050 2.2e-213 746.9 1126 40.3
Lalb_Chr01g0001491 Lupinus albus HOM05D005682 ORTHO05D007050 5.0e-213 745.7 1114 40.7
Eucgr.J00855 Eucalyptus grandis HOM05D005682 ORTHO05D007050 8.5e-213 745.0 1077 39.7
Aqoxy2G03805 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.4e-210 737.6 1098 39.3
HanXRQChr17g0540811 Helianthus annuus HOM05D005682 ORTHO05D007050 6.8e-210 735.3 1096 38.9
PSO782G3049 Papaver somniferum HOM05D005682 ORTHO05D007050 1.7e-205 720.7 1079 39.8
THA.LOC104826522 Tarenaya hassleriana HOM05D005682 ORTHO05D007050 3.8e-205 719.5 1113 39.3
Medtr4g074610 Medicago truncatula HOM05D005682 ORTHO05D007050 7.2e-204 715.3 1101 39.3
Lsat_1_v5_gn_3_33580 Lactuca sativa HOM05D005682 ORTHO05D007050 3.6e-203 713.0 1099 38.6
TPR.G32358 Trifolium pratense HOM05D005682 ORTHO05D007050 1.2e-201 708.0 1108 39.4
CsaV3_7G030540 Cucumis sativus L. HOM05D005682 ORTHO05D007050 2.6e-201 706.8 1039 39.7
ATR0618G435 Amborella trichopoda HOM05D005682 ORTHO05D000625 4.9e-200 702.6 1167 36.6
Ca_03025_v3 Cicer arietinum L. HOM05D005682 ORTHO05D007050 7.8e-198 695.3 1078 39.9
AL3G33230 Arabidopsis lyrata HOM05D005682 ORTHO05D007050 8.0e-195 685.3 1139 38.0
QL03p043857 Quercus lobata HOM05D005682 ORTHO05D007050 8.9e-194 681.8 1434 32.9
AT3G19780 Arabidopsis thaliana HOM05D005682 ORTHO05D007050 9.8e-193 678.3 1107 38.0
PGR044G2237 Punica granatum HOM05D005682 ORTHO05D007050 2.9e-192 676.8 1108 37.2
Thecc.02G161600 Theobroma cacao HOM05D005682 ORTHO05D007050 2.9e-192 676.8 911 42.7
Thhalv10019965m.g Eutrema salsugineum HOM05D005682 ORTHO05D007050 2.7e-190 670.2 1105 37.7
SalBow2G1379 Salvia bowleyana HOM05D005682 ORTHO05D007050 7.8e-190 668.7 1167 36.1
vmacro10900 Vaccinium macrocarpon HOM05D005682 ORTHO05D007050 1.0e-189 668.3 1201 37.1
Carub.0003s1966 Capsella rubella HOM05D005682 ORTHO05D007050 3.9e-189 666.4 1114 38.0
BcaB06g26047 Brassica carinata HOM05D005682 ORTHO05D007050 1.9e-188 664.1 1106 37.7
Ciclev10030666m.g Citrus clementina HOM05D005682 ORTHO05D007050 3.6e-187 659.8 900 42.2
BraA05t21829Z Brassica rapa HOM05D005682 ORTHO05D007050 8.0e-187 658.7 1102 37.2
BolC5t33225H Brassica oleracea HOM05D005682 ORTHO05D007050 1.7e-184 651.0 1103 37.1
Aa31LG8G6560 Aethionema arabicum HOM05D005682 ORTHO05D007050 2.7e-182 643.7 1101 38.1
Sp3g17800 Schrenkiella parvula HOM05D005682 ORTHO05D007050 5.6e-180 636.0 1103 37.2
arahy.Tifrunner.gnm1.ann1.3I7IYH Arachis hypogaea HOM05D005682 ORTHO05D007050 2.1e-179 634.0 929 41.1
Peaxi162Scf00363g00730 Petunia axillaris HOM05D005682 ORTHO05D007050 4.7e-179 632.9 917 40.2
Manes.11G108701 Manihot esculenta HOM05D005682 ORTHO05D007050 1.1e-178 631.7 909 43.9
Cfa008712 Carpinus fangiana HOM05D005682 ORTHO05D007050 5.8e-177 625.9 840 43.9
Sopen02g009170 Solanum pennellii HOM05D005682 ORTHO05D007050 1.0e-173 615.1 940 38.6
BcaC05g28416 Brassica carinata HOM05D005682 ORTHO05D007050 1.2e-171 608.2 1100 36.1
Zm00001eb221340 Zea mays HOM05D005682 ORTHO05D007050 3.3e-164 583.6 1218 32.3
arahy.Tifrunner.gnm1.ann1.H4B4B0 Arachis hypogaea HOM05D005682 ORTHO05D007050 1.1e-148 531.9 791 40.1
Nitab4.5_0000139g0140 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.3e-147 528.5 785 40.0
C05p45010 Brassica napus HOM05D005682 ORTHO05D007050 3.4e-145 520.4 905 36.6
A05p29780 Brassica napus HOM05D005682 ORTHO05D007050 2.7e-142 510.8 908 35.7
Cc11_g00090 Coffea canephora HOM05D005682 ORTHO05D007050 6.5e-136 489.6 826 38.1
CAN.G157.16 Capsicum annuum HOM05D005682 ORTHO05D007050 1.1e-135 488.8 833 37.1
Psat7g173480 Pisum sativum HOM05D005682 ORTHO05D007050 3.9e-133 480.3 828 38.0
unitig_699.g19973 Utricularia gibba HOM05D005682 ORTHO05D007050 1.0e-128 465.7 1086 31.1
Dinv11710 Davidia involucrata HOM05D005682 ORTHO05D007050 1.4e-125 455.3 510 46.7
SEGI_38899 Sequoiadendron giganteum HOM05D005682 ORTHO05D007050 2.0e-124 451.4 1260 28.5
Dinv11711 Davidia involucrata HOM05D005682 ORTHO05D007050 1.2e-121 442.2 480 49.6
CARHR095300 Cardamine hirsuta HOM05D005682 ORTHO05D007050 6.1e-118 429.9 770 37.4
Atru.chr11.1182 Acer truncatum HOM05D005682 ORTHO05D007050 3.3e-116 424.1 493 47.1
Hma1.2p1_0499F.1_g166820 Hydrangea macrophylla HOM05D005682 ORTHO05D007050 1.2e-113 415.6 476 47.3
Solyc02g055460.3 Solanum lycopersicum HOM05D005682 ORTHO05D007050 4.2e-111 407.1 694 36.2
COL.COLO4_08120 Corchorus olitorius HOM05D005682 ORTHO05D007050 9.7e-100 369.4 411 46.5
CDE04G1407 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 2.8e-99 367.9 728 34.2
Os10g0485100 Oryza sativa ssp. japonica HOM05D005682 ORTHO05D007050 3.8e-96 357.5 475 41.7
HPP92_008567 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.4e-92 344.0 492 39.2
BraA05t21816Z Brassica rapa HOM05D005682 ORTHO05D007050 1.9e-87 328.6 645 33.8
AagrBONN_evm.TU.Sc2ySwM_340.174 Anthoceros agrestis HOM05D005682 ORTHO05D007050 1.5e-84 318.9 1159 25.8
HPP92_008562 Vanilla planifolia HOM05D005682 ORTHO05D007050 4.1e-82 310.8 789 29.4
BcaC05g28417 Brassica carinata HOM05D005682 ORTHO05D007050 2.3e-77 295.0 462 39.0
Nitab4.5_0028170g0010 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.2e-74 284.6 500 37.2
SHI13893 Sapria himalayana HOM05D005682 ORTHO05D007050 1.3e-67 262.7 553 33.6
BcaC05g28407 Brassica carinata HOM05D005682 ORTHO05D007050 8.9e-61 240.0 346 38.2
CSS0028316 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 2.4e-58 231.9 274 44.5
CSS0031646 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.0e-56 226.5 384 38.8
CAN.G157.17 Capsicum annuum HOM05D005682 ORTHO05D007050 4.3e-55 221.1 250 46.0
CDE04G1313 Ceratophyllum demersum HOM05D005682 ORTHO05D007050 1.2e-52 213.0 269 40.9
CARHR095290 Cardamine hirsuta HOM05D005682 ORTHO05D007050 2.2e-51 208.8 351 36.8
Pp3c7_6630 Physcomitrium patens HOM05D005682 ORTHO05D007050 3.5e-49 201.4 1044 23.1
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.6e-46 192.6 1010 22.1
Solyc02g055470.2 Solanum lycopersicum HOM05D005682 ORTHO05D007050 4.2e-42 177.9 193 48.2
Sopen02g009200 Solanum pennellii HOM05D005682 ORTHO05D007050 5.4e-42 177.6 193 48.2
CSS0001307 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 1.0e-40 173.3 214 43.5
SHI13894 Sapria himalayana HOM05D005682 ORTHO05D007050 1.7e-40 172.6 296 34.5
Cc11_g04390 Coffea canephora HOM05D005682 ORTHO05D007050 3.9e-40 171.4 259 39.0
COL.COLO4_08119 Corchorus olitorius HOM05D005682 ORTHO05D007050 1.9e-39 169.1 172 46.5
Cc11_g00100 Coffea canephora HOM05D005682 ORTHO05D007050 3.3e-39 168.3 222 41.9
Nitab4.5_0002392g0030 Nicotiana tabacum HOM05D005682 ORTHO05D007050 3.3e-39 168.3 170 45.9
A05p29790 Brassica napus HOM05D005682 ORTHO05D007050 8.4e-35 153.7 193 42.5
Nitab4.5_0002392g0020 Nicotiana tabacum HOM05D005682 ORTHO05D007050 4.2e-34 151.4 185 44.3
SHI13892 Sapria himalayana HOM05D005682 ORTHO05D007050 1.3e-30 139.8 196 41.8
Nitab4.5_0000139g0150 Nicotiana tabacum HOM05D005682 ORTHO05D007050 1.8e-29 136.0 131 51.1
C05p44920 Brassica napus HOM05D005682 ORTHO05D007050 6.9e-21 107.5 172 34.3
CSS0026201 Camellia sinensis var. sinensis HOM05D005682 ORTHO05D007050 6.9e-21 107.5 126 44.4
Peaxi162Scf00363g00073 Petunia axillaris HOM05D005682 ORTHO05D007050 3.8e-19 101.7 125 45.6
BcaC05g28408 Brassica carinata HOM05D005682 ORTHO05D007050 1.9e-15 89.4 143 39.2
Psat4g043640 Pisum sativum HOM05D005682 ORTHO05D007050 1.4e-13 83.2 109 44.0
CBR_g66815 Chara braunii HOM05D005682 ORTHO05D007050 6.9e-13 80.9 152 27.6
SEGI_17937 Sequoiadendron giganteum HOM05D002497 ORTHO05D002697 1.3e-11 76.6 144 36.1
Aqoxy2G03797 Aquilegia oxysepala HOM05D005682 ORTHO05D007050 1.7e-11 76.3 103 40.8
HPP92_008566 Vanilla planifolia HOM05D005682 ORTHO05D007050 5.5e-10 71.2 173 30.6
HanXRQChr09g0264091 Helianthus annuus HOM05D002497 ORTHO05D002697 2.7e-09 68.9 144 34.7
SHI16731 Sapria himalayana HOM05D002497 ORTHO05D002697 2.7e-09 68.9 147 32.7
Lalb_Chr10g0093261 Lupinus albus HOM05D002497 ORTHO05D002697 6.1e-09 67.8 158 34.2
Lsat_1_v5_gn_4_170140 Lactuca sativa HOM05D002497 ORTHO05D002697 8.8e-08 63.9 145 33.1
Ciclev10012318m.g Citrus clementina HOM05D002497 ORTHO05D002697 2.0e-07 62.8 147 32.7
TWI18G0057 Tripterygium wilfordii HOM05D002497 ORTHO05D002697 2.0e-07 62.8 147 32.7
Eucgr.F02964 Eucalyptus grandis HOM05D002497 ORTHO05D002697 3.3e-07 62.0 147 30.6
Mapoly0072s0055 Marchantia polymorpha HOM05D002497 ORTHO05D002697 4.3e-07 61.6 150 33.3
SMO141G0017 Selaginella moellendorffii HOM05D002497 ORTHO05D002697 4.3e-07 61.6 150 28.7
PSO144G0124 Papaver somniferum HOM05D002497 ORTHO05D002697 7.4e-07 60.8 194 30.4
CAN.G1130.2 Capsicum annuum HOM05D002497 ORTHO05D002697 9.7e-07 60.5 156 34.6
Gorai.001G143100 Gossypium raimondii HOM05D002981 ORTHO05D003725 9.7e-07 60.5 263 27.0
Os01g0886000 Oryza sativa ssp. japonica HOM05D002497 ORTHO05D002697 1.3e-06 60.1 147 32.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 1.3e-06 60.1 152 30.3
CSS0029679 Camellia sinensis var. sinensis HOM05D002497 ORTHO05D002697 1.7e-06 59.7 161 31.7
Aa31LG6G8110 Aethionema arabicum HOM05D002497 ORTHO05D002697 2.2e-06 59.3 147 29.9
Hma1.2p1_0004F.1_g003840 Hydrangea macrophylla HOM05D002497 ORTHO05D002697 2.8e-06 58.9 149 31.5
ATR1089G083 Amborella trichopoda HOM05D002497 ORTHO05D002697 3.7e-06 58.5 150 30.0
CBR_g49322 Chara braunii HOM05D002497 ORTHO05D002697 3.7e-06 58.5 147 30.6
Zm00001eb297620 Zea mays HOM05D002497 ORTHO05D002697 3.7e-06 58.5 159 32.1
ClCG11G004610 Citrullus lanatus HOM05D002497 ORTHO05D002697 8.2e-06 57.4 149 31.5


User provided reference genes

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