Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007860 Simmondsia chinensis HOM05D006509 ORTHO05D008144 2.4e-187 658.7 338 100.0
EL10Ac9g22921 Beta vulgaris HOM05D006509 ORTHO05D008144 8.9e-105 384.4 341 58.9
TAR629G0624 Trochodendron aralioides HOM05D006509 ORTHO05D008144 3.2e-102 375.9 342 59.4
Hund08535 Selenicereus undatus HOM05D006509 ORTHO05D008144 2.5e-99 366.3 343 56.0
Nn1g04452 Nelumbo nucifera HOM05D006509 ORTHO05D008144 2.1e-98 363.2 335 58.5
GSVIVG01010764001 Vitis vinifera HOM05D006509 ORTHO05D008144 2.0e-96 356.7 335 59.1
Thecc.01G136400 Theobroma cacao HOM05D006509 ORTHO05D008144 2.6e-96 356.3 340 56.2
Duzib264G0706 Durio zibethinus HOM05D006509 ORTHO05D008144 1.1e-94 350.9 348 55.7
Ciclev10032158m.g Citrus clementina HOM05D006509 ORTHO05D008144 1.9e-94 350.1 244 68.0
Atru.chr11.1320 Acer truncatum HOM05D006509 ORTHO05D008144 1.6e-93 347.1 241 68.9
Atru.chr11.1232 Acer truncatum HOM05D006509 ORTHO05D008144 2.1e-93 346.7 241 68.9
Nitab4.5_0002192g0100 Nicotiana tabacum HOM05D006509 ORTHO05D008144 2.1e-93 346.7 242 67.8
QL03p043626 Quercus lobata HOM05D006509 ORTHO05D008144 3.9e-92 342.4 343 53.6
Cfa008714 Carpinus fangiana HOM05D006509 ORTHO05D008144 8.6e-92 341.3 346 56.1
Peaxi162Scf00818g00020 Petunia axillaris HOM05D006509 ORTHO05D008144 1.1e-91 340.9 242 66.9
CSS0015169 Camellia sinensis var. sinensis HOM05D006509 ORTHO05D008144 4.3e-91 339.0 244 68.4
Manes.09G055500 Manihot esculenta HOM05D006509 ORTHO05D008144 5.6e-91 338.6 244 66.4
CAN.G157.10 Capsicum annuum HOM05D006509 ORTHO05D008144 9.6e-91 337.8 246 65.4
Eucgr.G02566 Eucalyptus grandis HOM05D006509 ORTHO05D008144 9.6e-91 337.8 242 66.1
Haze_11724 Corylus avellana HOM05D006509 ORTHO05D008144 1.2e-90 337.4 304 59.2
CiPaw.05G167100 Carya illinoinensis HOM05D006509 ORTHO05D008144 8.1e-90 334.7 332 54.5
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.4e-89 334.0 305 59.7
Hma1.2p1_1005F.1_g246910 Hydrangea macrophylla HOM05D006509 ORTHO05D008144 1.4e-89 334.0 251 68.1
TWI74G1084 Tripterygium wilfordii HOM05D006509 ORTHO05D008144 1.4e-89 334.0 228 71.1
Gohir.A09G005300 Gossypium hirsutum HOM05D006509 ORTHO05D008144 5.2e-89 332.0 245 66.9
Gorai.006G006200 Gossypium raimondii HOM05D006509 ORTHO05D008144 5.2e-89 332.0 245 66.5
Lsat_1_v5_gn_3_32880 Lactuca sativa HOM05D006509 ORTHO05D008144 1.2e-88 330.9 245 64.9
Gorai.010G244900 Gossypium raimondii HOM05D006509 ORTHO05D008144 1.5e-88 330.5 342 54.4
Gohir.D09G004600 Gossypium hirsutum HOM05D006509 ORTHO05D008144 2.6e-88 329.7 245 66.1
PGSC0003DMG400019835 Solanum tuberosum HOM05D006509 ORTHO05D008144 2.6e-88 329.7 243 65.8
AUR62017665 Chenopodium quinoa HOM05D006509 ORTHO05D008144 3.4e-88 329.3 337 54.3
Gohir.D13G187200 Gossypium hirsutum HOM05D006509 ORTHO05D008144 3.4e-88 329.3 342 55.0
HanXRQChr06g0171951 Helianthus annuus HOM05D006509 ORTHO05D008144 3.4e-88 329.3 242 65.3
PSO478G1783 Papaver somniferum HOM05D006509 ORTHO05D008144 3.4e-88 329.3 245 65.7
THA.LOC104800032 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 4.4e-88 328.9 244 66.4
Gohir.A13G179100 Gossypium hirsutum HOM05D006509 ORTHO05D008144 7.6e-88 328.2 228 70.6
PSO017G6086 Papaver somniferum HOM05D006509 ORTHO05D008144 9.9e-88 327.8 282 59.9
A05p29310 Brassica napus HOM05D006509 ORTHO05D008144 1.7e-87 327.0 243 64.6
RcHm_v2.0_Chr1g0363071 Rosa chinensis HOM05D006509 ORTHO05D008144 2.2e-87 326.6 227 68.7
CANSAT56G2102 Cannabis sativa HOM05D006509 ORTHO05D008144 4.9e-87 325.5 246 64.6
C05p44930 Brassica napus HOM05D006509 ORTHO05D008144 6.4e-87 325.1 243 65.0
BolC5t33216H Brassica oleracea HOM05D006509 ORTHO05D008144 6.4e-87 325.1 243 65.0
BcaC05g28409 Brassica carinata HOM05D006509 ORTHO05D008144 8.4e-87 324.7 243 64.6
BraA05t21822Z Brassica rapa HOM05D006509 ORTHO05D008144 8.4e-87 324.7 245 65.3
PGR004G1007 Punica granatum HOM05D006509 ORTHO05D008144 8.4e-87 324.7 245 64.9
MSTRG.22733 Avicennia marina HOM05D006509 ORTHO05D008144 1.9e-86 323.6 251 64.5
DCAR_030403 Daucus carota HOM05D006509 ORTHO05D008144 4.2e-86 322.4 244 66.4
THA.LOC104814131 Tarenaya hassleriana HOM05D006509 ORTHO05D008144 5.4e-86 322.0 244 64.8
MD01G1107600 Malus domestica HOM05D006509 ORTHO05D008144 7.1e-86 321.6 243 67.1
Carub.0003s1969 Capsella rubella HOM05D006509 ORTHO05D008144 9.3e-86 321.2 246 63.0
CARHR095320 Cardamine hirsuta HOM05D006509 ORTHO05D008144 9.3e-86 321.2 249 63.5
FvH4_7g19250 Fragaria vesca HOM05D006509 ORTHO05D008144 1.6e-85 320.5 230 69.1
FAN06G0528 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.6e-85 320.5 230 69.1
FAN03G0898 Fragaria x ananassa HOM05D006509 ORTHO05D008144 2.7e-85 319.7 230 69.1
FAN01G2825 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.5e-85 319.3 230 69.1
BcaB06g26050 Brassica carinata HOM05D006509 ORTHO05D008144 6.0e-85 318.5 244 63.9
Sp3g17820 Schrenkiella parvula HOM05D006509 ORTHO05D008144 6.0e-85 318.5 346 50.9
Thhalv10021111m.g Eutrema salsugineum HOM05D006509 ORTHO05D008144 7.8e-85 318.2 346 50.6
Actinidia04136 Actinidia chinensis HOM05D006509 ORTHO05D008144 1.0e-84 317.8 246 65.9
Prupe.2G212300 Prunus persica HOM05D006509 ORTHO05D008144 1.3e-84 317.4 241 64.3
Ca_17903_v3 Cicer arietinum L. HOM05D006509 ORTHO05D008144 1.7e-84 317.0 246 63.4
Solyc02g021050.3 Solanum lycopersicum HOM05D006509 ORTHO05D008144 1.7e-84 317.0 243 62.6
VMungo0251G2215 Vigna mungo HOM05D006509 ORTHO05D008144 2.3e-84 316.6 237 65.0
Lj4g0012507 Lotus japonicus HOM05D006509 ORTHO05D008144 3.0e-84 316.2 239 66.1
TPR.G6737 Trifolium pratense HOM05D006509 ORTHO05D008144 3.0e-84 316.2 302 54.6
Aqoxy4G00161 Aquilegia oxysepala HOM05D006509 ORTHO05D008144 3.9e-84 315.8 236 66.1
SalBow2G3295 Salvia bowleyana HOM05D006509 ORTHO05D008144 5.1e-84 315.5 230 65.2
arahy.Tifrunner.gnm1.ann1.LJ2JSE Arachis hypogaea HOM05D006509 ORTHO05D008144 8.7e-84 314.7 238 65.5
Sopen02g005330 Solanum pennellii HOM05D006509 ORTHO05D008144 8.7e-84 314.7 243 62.1
vmacro14294 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 8.7e-84 314.7 294 55.4
vmacro23064 Vaccinium macrocarpon HOM05D006509 ORTHO05D008144 8.7e-84 314.7 294 55.4
Phvul.002G240600 Phaseolus vulgaris HOM05D006509 ORTHO05D008144 1.1e-83 314.3 238 65.5
AT3G19810 Arabidopsis thaliana HOM05D006509 ORTHO05D008144 1.9e-83 313.5 242 63.2
arahy.Tifrunner.gnm1.ann1.6728UU Arachis hypogaea HOM05D006509 ORTHO05D008144 1.9e-83 313.5 241 64.7
ClCG09G005710 Citrullus lanatus HOM05D006509 ORTHO05D008144 1.9e-83 313.5 238 63.9
Medtr8g086630 Medicago truncatula HOM05D006509 ORTHO05D008144 1.9e-83 313.5 246 62.6
Migut.I00780 Erythranthe guttata HOM05D006509 ORTHO05D008144 5.6e-83 312.0 277 55.2
AL3G33260 Arabidopsis lyrata HOM05D006509 ORTHO05D008144 7.3e-83 311.6 248 62.1
Glyma.05G160301 Glycine max HOM05D006509 ORTHO05D008144 1.6e-82 310.5 235 63.8
CDE04G0697 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 2.8e-82 309.7 282 59.9
arahy.Tifrunner.gnm1.ann1.4V51TJ Arachis hypogaea HOM05D006509 ORTHO05D008144 6.2e-82 308.5 242 64.5
Sed0013319 Sechium edule HOM05D006509 ORTHO05D008144 6.2e-82 308.5 237 62.4
arahy.Tifrunner.gnm1.ann1.IV5K9E Arachis hypogaea HOM05D006509 ORTHO05D008144 8.1e-82 308.1 242 64.0
Lalb_Chr13g0295231 Lupinus albus HOM05D006509 ORTHO05D008144 8.1e-82 308.1 233 65.2
Aa31LG8G6580 Aethionema arabicum HOM05D006509 ORTHO05D008144 1.4e-81 307.4 260 58.1
CDE07G1911 Ceratophyllum demersum HOM05D006509 ORTHO05D008144 1.4e-81 307.4 233 66.5
SGA_v2.0_scaffold5G02679 Striga asiatica HOM05D006509 ORTHO05D008144 2.6e-80 303.1 229 64.2
CsaV3_7G029430 Cucumis sativus L. HOM05D006509 ORTHO05D008144 4.5e-80 302.4 237 61.2
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.8e-79 299.3 209 71.3
Sabra10G0129900 Salix brachista HOM05D006509 ORTHO05D008144 1.4e-78 297.4 253 59.7
MBI06_g12322_MAGBIO Magnolia biondii HOM05D006509 ORTHO05D008144 3.2e-78 296.2 214 66.8
Potri.010G170100 Populus trichocarpa HOM05D006509 ORTHO05D008144 5.4e-78 295.4 240 60.0
Migut.I00779 Erythranthe guttata HOM05D006509 ORTHO05D008144 4.8e-74 282.3 232 58.2
Rhsim01G0196900 Rhododendron simsii HOM05D006509 ORTHO05D008144 1.8e-73 280.4 292 50.7
ATR0618G169 Amborella trichopoda HOM05D006509 ORTHO05D008144 1.2e-72 277.7 239 59.8
Psat7g069200 Pisum sativum HOM05D006509 ORTHO05D008144 1.3e-71 274.2 252 54.4
Lj6C721T21 Lonicera japonica HOM05D006509 ORTHO05D008144 5.5e-70 268.9 239 57.3
Os02g0831200 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 4.6e-69 265.8 233 56.7
MELO3C015985.2 Cucumis melo HOM05D006509 ORTHO05D008144 6.7e-68 261.9 201 63.2
Zm00001eb259480 Zea mays HOM05D006509 ORTHO05D008144 2.7e-61 240.0 224 58.5
AUR62015202 Chenopodium quinoa HOM05D006509 ORTHO05D008144 3.3e-59 233.0 157 72.0
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 3.7e-58 229.6 166 68.7
Medtr4g086490 Medicago truncatula HOM05D000001 ORTHO05D000003 2.2e-55 220.3 207 56.5
COL.COLO4_35800 Corchorus olitorius HOM05D006509 ORTHO05D008144 1.1e-51 208.0 143 70.6
AUR62014968 Chenopodium quinoa HOM05D006509 ORTHO05D008144 2.8e-50 203.4 136 70.6
Pp3c4_29820 Physcomitrium patens HOM05D006509 ORTHO05D008144 4.8e-50 202.6 249 42.6
Dinv39609 Davidia involucrata HOM05D006509 ORTHO05D008144 1.4e-46 191.0 138 65.9
SEGI_16170 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 2.5e-46 190.3 237 46.8
unitig_747.g21717 Utricularia gibba HOM05D006509 ORTHO05D008144 3.2e-46 189.9 155 57.4
Mapoly0002s0264 Marchantia polymorpha HOM05D006509 ORTHO05D008144 4.2e-46 189.5 241 44.0
SEGI_30002 Sequoiadendron giganteum HOM05D006509 ORTHO05D008144 7.2e-46 188.7 237 46.0
CBR_g57847 Chara braunii HOM05D006509 ORTHO05D008144 1.0e-44 184.9 246 40.2
Cc03_g14920 Coffea canephora HOM05D006509 ORTHO05D008144 9.7e-43 178.3 138 63.8
AUR62018171 Chenopodium quinoa HOM05D006509 ORTHO05D008144 9.1e-41 171.8 201 50.7
FAN10G0955 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.2e-37 161.4 169 53.3
Cpa.g.sc63.3 Carica papaya HOM05D006509 ORTHO05D008144 3.6e-37 159.8 157 58.0
Glyma.08G117902 Glycine max HOM05D006509 ORTHO05D008144 6.1e-37 159.1 131 56.5
ECA246G0117 Erigeron canadensis HOM05D006509 ORTHO05D008144 1.7e-34 151.0 102 72.5
Os04g0108300 Oryza sativa ssp. japonica HOM05D006509 ORTHO05D008144 3.1e-33 146.7 116 56.0
Cc00_g35200 Coffea canephora HOM05D006509 ORTHO05D008144 1.1e-30 138.3 211 45.0
Oeu049185.1 Olea europaea HOM05D006509 ORTHO05D008144 1.6e-29 134.4 108 61.1
AagrBONN_evm.TU.Sc2ySwM_362.2130 Anthoceros agrestis HOM05D006509 ORTHO05D008144 7.0e-25 119.0 232 35.3
FAN01G0805 Fragaria x ananassa HOM05D006509 ORTHO05D008144 1.6e-16 91.3 64 68.8
Ca_19971_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 1.1e-14 85.1 75 57.3
Oeu033605.1 Olea europaea HOM05D006509 ORTHO05D008144 1.8e-12 77.8 74 51.4


User provided reference genes

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