Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 8.9e-82 307.0 167 100.0
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 5.0e-40 168.3 169 55.0
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 1.1e-39 167.2 165 57.6
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 1.1e-39 167.2 165 57.6
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 3.2e-39 165.6 169 53.8
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 9.3e-39 164.1 172 54.7
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 1.2e-38 163.7 165 57.0
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 1.2e-38 163.7 165 57.0
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 1.2e-38 163.7 165 57.0
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 1.6e-38 163.3 165 55.8
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 2.1e-38 162.9 168 54.8
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 7.9e-38 161.0 172 51.2
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 1.8e-37 159.8 168 53.0
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 2.3e-37 159.5 172 52.3
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 3.9e-37 158.7 168 53.0
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 6.7e-37 157.9 168 52.4
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 8.8e-37 157.5 165 53.9
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 8.8e-37 157.5 168 50.0
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 1.1e-36 157.1 171 52.6
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.5e-36 156.8 168 50.0
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 1.9e-36 156.4 168 51.8
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 2.5e-36 156.0 169 51.5
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 3.3e-36 155.6 174 52.9
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 3.3e-36 155.6 169 50.3
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 5.7e-36 154.8 170 50.6
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 5.7e-36 154.8 174 52.9
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 7.4e-36 154.5 167 52.7
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 9.7e-36 154.1 156 55.8
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.3e-35 153.7 171 50.3
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 1.7e-35 153.3 155 55.5
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 4.8e-35 151.8 173 51.4
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 4.8e-35 151.8 174 49.4
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 6.3e-35 151.4 172 50.6
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 1.8e-34 149.8 170 50.0
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 1.8e-34 149.8 171 49.1
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 5.3e-34 148.3 174 52.9
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 6.9e-34 147.9 168 50.6
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 6.9e-34 147.9 168 49.4
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 9.1e-34 147.5 169 50.3
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 1.5e-33 146.7 170 49.4
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 2.0e-33 146.4 181 48.1
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 2.0e-33 146.4 169 48.5
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 4.5e-33 145.2 174 51.1
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 2.2e-32 142.9 165 46.7
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 2.9e-32 142.5 168 47.0
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 2.9e-32 142.5 169 52.1
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 2.9e-32 142.5 175 49.1
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 5.0e-32 141.7 163 48.5
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 6.5e-32 141.4 168 48.2
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 6.5e-32 141.4 165 46.1
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 8.5e-32 141.0 169 52.1
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 1.9e-31 139.8 139 56.1
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 1.9e-31 139.8 169 46.2
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 2.5e-31 139.4 174 49.4
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 2.5e-31 139.4 167 48.5
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 4.2e-31 138.7 167 47.9
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 4.2e-31 138.7 165 47.3
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 4.2e-31 138.7 164 49.4
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 5.5e-31 138.3 170 46.5
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 9.4e-31 137.5 173 47.4
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 9.4e-31 137.5 174 49.4
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 9.4e-31 137.5 176 49.4
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 1.2e-30 137.1 173 48.0
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 1.6e-30 136.7 174 48.3
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.1e-30 136.3 174 48.3
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 2.1e-30 136.3 168 46.4
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 2.1e-30 136.3 170 47.6
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 3.6e-30 135.6 171 45.0
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 6.1e-30 134.8 165 46.7
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 8.8e-29 131.0 171 45.0
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 1.1e-28 130.6 167 46.7
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 2.0e-28 129.8 175 47.4
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 3.3e-28 129.0 167 49.7
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 5.7e-28 128.3 167 48.5
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 7.4e-28 127.9 157 46.5
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 7.4e-28 127.9 167 43.1
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 9.7e-28 127.5 166 44.6
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 9.7e-28 127.5 166 44.6
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 1.3e-27 127.1 166 44.6
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 6.3e-27 124.8 170 42.4
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 1.4e-26 123.6 139 46.8
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 1.8e-26 123.2 165 44.8
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 4.1e-26 122.1 167 44.3
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 5.3e-26 121.7 161 44.7
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 6.9e-26 121.3 164 46.3
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 1.3e-24 117.1 160 44.4
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 6.5e-24 114.8 169 43.2
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 8.5e-24 114.4 164 42.1
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 2.3e-21 106.3 127 48.0
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 3.0e-21 105.9 169 43.2
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 1.1e-20 104.0 142 43.0
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 2.8e-19 99.4 116 52.6
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 1.1e-18 97.4 145 45.5
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 5.9e-17 91.7 165 38.8
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 3.2e-15 85.9 152 42.1
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.2e-14 84.0 131 42.0
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 5.2e-13 78.6 119 41.2
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 2.6e-12 76.3 131 36.6
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 2.8e-11 72.8 157 33.1
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 3.7e-11 72.4 88 51.1
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.2e-09 67.4 147 33.3
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 1.9e-07 60.1 78 46.2
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 2.7e-06 56.2 71 47.9


User provided reference genes

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