Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0006890 Simmondsia chinensis HOM05D008748 ORTHO05D000649 6.7e-76 287.3 153 100.0
Sc06g0006880 Simmondsia chinensis HOM05D008748 ORTHO05D000649 5.0e-47 191.4 129 76.7
Sc06g0006130 Simmondsia chinensis HOM05D008748 ORTHO05D000649 2.1e-37 159.5 152 55.9
Sc06g0006870 Simmondsia chinensis HOM05D008748 ORTHO05D000649 2.6e-35 152.5 147 58.5
Ah.01g015990 Amaranthus hybridus HOM05D008748 ORTHO05D000649 3.6e-29 132.1 133 51.9
AUR62041319 Chenopodium quinoa HOM05D000335 ORTHO05D001251 2.0e-27 126.3 145 45.5
THA.LOC104810884 Tarenaya hassleriana HOM05D000733 ORTHO05D000649 6.2e-13 78.2 136 31.6
THA.LOC104800572 Tarenaya hassleriana HOM05D008748 ORTHO05D000649 8.1e-13 77.8 145 35.2
BolC2t07209H Brassica oleracea HOM05D000733 ORTHO05D000649 2.3e-12 76.3 148 32.4
BcaC05g24735 Brassica carinata HOM05D008748 ORTHO05D000649 3.1e-12 75.9 146 31.5
BcaC03g13927 Brassica carinata HOM05D000733 ORTHO05D000649 4.0e-12 75.5 151 32.5
FvH4_3g30480 Fragaria vesca HOM05D000980 ORTHO05D000649 4.0e-12 75.5 147 34.7
FAN11G0534 Fragaria x ananassa HOM05D000980 ORTHO05D000649 5.2e-12 75.1 147 34.0
FAN16G0197 Fragaria x ananassa HOM05D000980 ORTHO05D000649 5.2e-12 75.1 147 34.0
FAN21G3359 Fragaria x ananassa HOM05D000980 ORTHO05D000649 5.2e-12 75.1 147 34.0
Rhsim13G0101800 Rhododendron simsii HOM05D000733 ORTHO05D000649 5.2e-12 75.1 147 36.1
Oeu035520.1 Olea europaea HOM05D000980 ORTHO05D000649 6.8e-12 74.7 147 33.3
C05p06280 Brassica napus HOM05D008748 ORTHO05D000649 8.9e-12 74.3 146 31.5
BolC5t29385H Brassica oleracea HOM05D008748 ORTHO05D000649 8.9e-12 74.3 146 31.5
C02p11360 Brassica napus HOM05D000733 ORTHO05D000649 1.2e-11 73.9 151 31.8
CSS0035712 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000649 1.2e-11 73.9 146 35.6
FAN25G0910 Fragaria x ananassa HOM05D000980 ORTHO05D000649 1.2e-11 73.9 147 34.0
Medtr2g011350 Medicago truncatula HOM05D000980 ORTHO05D000649 1.2e-11 73.9 151 34.4
Rhsim01G0210100 Rhododendron simsii HOM05D000980 ORTHO05D000649 1.2e-11 73.9 146 33.6
AL1G18560 Arabidopsis lyrata HOM05D008748 ORTHO05D000649 1.5e-11 73.6 145 31.7
A06p05220 Brassica napus HOM05D008748 ORTHO05D000649 1.5e-11 73.6 144 30.6
BraA06t23729Z Brassica rapa HOM05D008748 ORTHO05D000649 1.5e-11 73.6 144 30.6
PSO339G2761 Papaver somniferum HOM05D000733 ORTHO05D000649 1.5e-11 73.6 148 37.2
BcaC07g41960 Brassica carinata HOM05D008748 ORTHO05D000649 2.0e-11 73.2 144 30.6
BcaC07g42515 Brassica carinata HOM05D008748 ORTHO05D000649 2.0e-11 73.2 144 31.2
A09p65980 Brassica napus HOM05D008748 ORTHO05D000649 2.0e-11 73.2 144 30.6
C08p50140 Brassica napus HOM05D008748 ORTHO05D000649 2.0e-11 73.2 144 30.6
BolC8t52543H Brassica oleracea HOM05D008748 ORTHO05D000649 2.0e-11 73.2 144 30.6
Psat1g209680 Pisum sativum HOM05D000733 ORTHO05D000649 2.0e-11 73.2 147 33.3
AT5G22870 Arabidopsis thaliana HOM05D000733 ORTHO05D000649 2.6e-11 72.8 134 32.1
BraA02t05696Z Brassica rapa HOM05D000733 ORTHO05D000649 2.6e-11 72.8 151 31.1
BcaB07g34062 Brassica carinata HOM05D008748 ORTHO05D000649 3.4e-11 72.4 144 30.6
CSS0043169 Camellia sinensis var. sinensis HOM05D000733 ORTHO05D000649 3.4e-11 72.4 146 34.9
Migut.N02538 Erythranthe guttata HOM05D000980 ORTHO05D000649 3.4e-11 72.4 151 35.1
PSO801G0405 Papaver somniferum HOM05D000733 ORTHO05D000649 3.4e-11 72.4 148 37.2
Oeu000603.1 Olea europaea HOM05D000980 ORTHO05D000649 4.4e-11 72.0 147 32.7
AT1G08160 Arabidopsis thaliana HOM05D008748 ORTHO05D000649 5.8e-11 71.6 145 31.0
CiPaw.14G106700 Carya illinoinensis HOM05D000733 ORTHO05D000649 5.8e-11 71.6 147 32.7
Thhalv10009522m.g Eutrema salsugineum HOM05D008748 ORTHO05D000649 5.8e-11 71.6 144 29.2
Glyma.15G065400 Glycine max HOM05D000733 ORTHO05D000649 5.8e-11 71.6 143 34.3
RcHm_v2.0_Chr5g0056431 Rosa chinensis HOM05D000980 ORTHO05D000649 5.8e-11 71.6 147 32.0
PGSC0003DMG400024324 Solanum tuberosum HOM05D000980 ORTHO05D000649 5.8e-11 71.6 147 30.6
AL6G33990 Arabidopsis lyrata HOM05D000733 ORTHO05D000649 7.6e-11 71.2 151 31.8
arahy.Tifrunner.gnm1.ann1.2X3X0W Arachis hypogaea HOM05D000980 ORTHO05D000649 7.6e-11 71.2 147 34.7
arahy.Tifrunner.gnm1.ann1.ECG1V9 Arachis hypogaea HOM05D000980 ORTHO05D000649 7.6e-11 71.2 147 34.7
BcaB03g13352 Brassica carinata HOM05D008748 ORTHO05D000649 7.6e-11 71.2 144 29.2
A08p35310 Brassica napus HOM05D008748 ORTHO05D000649 7.6e-11 71.2 144 30.6
BraA08t35440Z Brassica rapa HOM05D008748 ORTHO05D000649 7.6e-11 71.2 144 30.6
CAN.G246.4 Capsicum annuum HOM05D000980 ORTHO05D000649 7.6e-11 71.2 149 30.9
CiPaw.13G144600 Carya illinoinensis HOM05D000733 ORTHO05D000649 7.6e-11 71.2 147 32.7
Nitab4.5_0005152g0040 Nicotiana tabacum HOM05D000733 ORTHO05D000649 7.6e-11 71.2 147 32.0
C08p03520 Brassica napus HOM05D008748 ORTHO05D000649 9.9e-11 70.9 144 29.9
BolC8t47156H Brassica oleracea HOM05D008748 ORTHO05D000649 9.9e-11 70.9 144 29.9
Carub.0001s0752 Capsella rubella HOM05D008748 ORTHO05D000649 9.9e-11 70.9 145 31.0
Ca_00222_v3 Cicer arietinum L. HOM05D001102 ORTHO05D001018 9.9e-11 70.9 132 34.8
Sp6g22540 Schrenkiella parvula HOM05D000733 ORTHO05D000649 9.9e-11 70.9 145 31.7
Prupe.6G114100 Prunus persica HOM05D000980 ORTHO05D000649 1.3e-10 70.5 147 32.7
MD11G1149600 Malus domestica HOM05D000980 ORTHO05D000649 1.7e-10 70.1 147 32.7
Sp1g06810 Schrenkiella parvula HOM05D008748 ORTHO05D000649 1.7e-10 70.1 144 29.9
Atru.chr3.3498 Acer truncatum HOM05D000980 ORTHO05D000649 2.2e-10 69.7 143 32.2
Glyma.13G248600 Glycine max HOM05D000733 ORTHO05D000649 2.2e-10 69.7 147 32.7
TPR.G19617 Trifolium pratense HOM05D000980 ORTHO05D000649 2.2e-10 69.7 151 32.5
Lj6g0019562 Lotus japonicus HOM05D000733 ORTHO05D000649 2.9e-10 69.3 147 32.7
VMungo0540G2319 Vigna mungo HOM05D000733 ORTHO05D000649 2.9e-10 69.3 147 33.3
Cc01_g10170 Coffea canephora HOM05D000980 ORTHO05D000649 3.8e-10 68.9 150 28.7
Peaxi162Scf00392g00045 Petunia axillaris HOM05D000733 ORTHO05D000649 3.8e-10 68.9 147 28.6
TAR633G1866 Trochodendron aralioides HOM05D000733 ORTHO05D000649 3.8e-10 68.9 147 33.3
Ah.01g016000 Amaranthus hybridus HOM05D000733 ORTHO05D000649 4.9e-10 68.6 146 30.8
Cpa.g.sc47.9 Carica papaya HOM05D000733 ORTHO05D000649 4.9e-10 68.6 147 29.3
Phvul.006G194400 Phaseolus vulgaris HOM05D000733 ORTHO05D000649 6.4e-10 68.2 147 32.0
Carub.0006s2061 Capsella rubella HOM05D000733 ORTHO05D000649 8.4e-10 67.8 151 33.1
CDE06G0023 Ceratophyllum demersum HOM05D000733 ORTHO05D000649 8.4e-10 67.8 147 31.3
Duzib168G1538 Durio zibethinus HOM05D000733 ORTHO05D000649 8.4e-10 67.8 147 32.0
Nitab4.5_0001361g0260 Nicotiana tabacum HOM05D000733 ORTHO05D000649 8.4e-10 67.8 141 32.6
MSTRG.17755 Avicennia marina HOM05D000980 ORTHO05D000649 1.1e-09 67.4 147 32.0
BcaB05g22678 Brassica carinata HOM05D000733 ORTHO05D000649 1.4e-09 67.0 151 30.5
Manes.04G012200 Manihot esculenta HOM05D000733 ORTHO05D000649 1.4e-09 67.0 147 29.3
EL10Ac9g21008 Beta vulgaris HOM05D000980 ORTHO05D000649 1.9e-09 66.6 147 32.0
CAN.G546.58 Capsicum annuum HOM05D000733 ORTHO05D000649 1.9e-09 66.6 149 32.2
Hma1.2p1_0051F.1_g029590 Hydrangea macrophylla HOM05D000733 ORTHO05D000649 1.9e-09 66.6 147 29.3
Lalb_Chr20g0122491 Lupinus albus HOM05D000733 ORTHO05D000649 2.4e-09 66.2 125 35.2
Aa31sc695G10 Aethionema arabicum HOM05D008748 ORTHO05D000649 3.2e-09 65.9 140 27.9
Aqoxy1G01055 Aquilegia oxysepala HOM05D000980 ORTHO05D000649 3.2e-09 65.9 148 31.8
CARHR190690 Cardamine hirsuta HOM05D000733 ORTHO05D000649 3.2e-09 65.9 151 29.8
ClCG01G013910 Citrullus lanatus HOM05D000980 ORTHO05D000649 3.2e-09 65.9 147 29.9
Sabra09G0001500 Salix brachista HOM05D008748 ORTHO05D000649 3.2e-09 65.9 113 38.1
Eucgr.J00393 Eucalyptus grandis HOM05D000980 ORTHO05D000649 4.1e-09 65.5 146 32.9
HanXRQChr13g0403571 Helianthus annuus HOM05D000733 ORTHO05D000649 4.1e-09 65.5 147 28.6
Nn6g35187 Nelumbo nucifera HOM05D000733 ORTHO05D000649 4.1e-09 65.5 148 34.5
Potri.009G003800 Populus trichocarpa HOM05D000980 ORTHO05D000649 4.1e-09 65.5 135 32.6
PGR119G1497 Punica granatum HOM05D000980 ORTHO05D000649 5.4e-09 65.1 146 34.2
TAR633G0760 Trochodendron aralioides HOM05D000980 ORTHO05D000649 5.4e-09 65.1 148 34.5
Hma1.2p1_0097F.1_g048090 Hydrangea macrophylla HOM05D002687 ORTHO05D002052 7.1e-09 64.7 150 29.3
BNapus_Darmor_BZH_scaffold_38p00280 Brassica napus HOM05D000733 ORTHO05D000649 9.2e-09 64.3 127 34.6
Dinv16242 Davidia involucrata HOM05D001163 ORTHO05D000649 1.2e-08 63.9 141 30.5
Dinv29388 Davidia involucrata HOM05D000733 ORTHO05D000649 1.2e-08 63.9 144 28.5
Thhalv10015654m.g Eutrema salsugineum HOM05D000733 ORTHO05D000649 1.2e-08 63.9 147 29.3
HanXRQChr01g0019471 Helianthus annuus HOM05D000733 ORTHO05D000649 1.2e-08 63.9 150 28.0
TWI31G0681 Tripterygium wilfordii HOM05D000733 ORTHO05D000649 1.2e-08 63.9 151 29.8
TAR369G0482 Trochodendron aralioides HOM05D000980 ORTHO05D000649 1.2e-08 63.9 128 33.6
Manes.11G153200 Manihot esculenta HOM05D000980 ORTHO05D000649 1.6e-08 63.5 150 28.7
Cc01_g08570 Coffea canephora HOM05D002687 ORTHO05D002052 2.1e-08 63.2 140 30.7
CsaV3_1G014170 Cucumis sativus L. HOM05D000980 ORTHO05D000649 2.1e-08 63.2 147 30.6
Duzib150G0967 Durio zibethinus HOM05D000980 ORTHO05D000649 2.7e-08 62.8 135 30.4
Gohir.A09G087800 Gossypium hirsutum HOM05D000980 ORTHO05D000649 2.7e-08 62.8 147 29.3
Nn2g13881 Nelumbo nucifera HOM05D000733 ORTHO05D000649 2.7e-08 62.8 147 32.0
Sopen11g026240 Solanum pennellii HOM05D000733 ORTHO05D000649 2.7e-08 62.8 143 28.7
TWI75G0760 Tripterygium wilfordii HOM05D000733 ORTHO05D000649 2.7e-08 62.8 135 29.6
Ah.15g100060 Amaranthus hybridus HOM05D002687 ORTHO05D002052 3.5e-08 62.4 151 29.8
CANSAT64G2923 Cannabis sativa HOM05D000733 ORTHO05D000649 3.5e-08 62.4 147 29.3
Ciclev10029305m.g Citrus clementina HOM05D000733 ORTHO05D000649 3.5e-08 62.4 127 29.9
Duzib170G0419 Durio zibethinus HOM05D000980 ORTHO05D000649 3.5e-08 62.4 147 29.9
ECA233G2410 Erigeron canadensis HOM05D000980 ORTHO05D000649 3.5e-08 62.4 148 26.4
Solyc11g066490.1 Solanum lycopersicum HOM05D000733 ORTHO05D000649 3.5e-08 62.4 143 28.7
Haze_23524 Corylus avellana HOM05D000980 ORTHO05D000649 6.0e-08 61.6 147 29.9
DCAR_015500 Daucus carota HOM05D000980 ORTHO05D000649 6.0e-08 61.6 137 32.1
Gorai.006G104100 Gossypium raimondii HOM05D000980 ORTHO05D000649 6.0e-08 61.6 147 29.3
QL01p014807 Quercus lobata HOM05D000733 ORTHO05D000649 6.0e-08 61.6 147 26.5
SGA_v2.0_scaffold331G48915 Striga asiatica HOM05D000980 ORTHO05D000649 1.0e-07 60.8 139 30.2
MELO3C004861.2 Cucumis melo HOM05D000980 ORTHO05D000649 1.3e-07 60.5 147 29.3
Ah.01g015970 Amaranthus hybridus HOM05D008748 ORTHO05D000649 1.7e-07 60.1 121 31.4
Gohir.D09G087700 Gossypium hirsutum HOM05D000733 ORTHO05D000649 1.7e-07 60.1 147 28.6
PGSC0003DMG400000476 Solanum tuberosum HOM05D000733 ORTHO05D000649 1.7e-07 60.1 149 28.9
PSO339G5167 Papaver somniferum HOM05D000733 ORTHO05D000649 3.0e-07 59.3 148 30.4
Sc12g0003700 Simmondsia chinensis HOM05D000733 ORTHO05D000649 3.0e-07 59.3 147 28.6
TAR623G0484 Trochodendron aralioides HOM05D008748 ORTHO05D000649 3.0e-07 59.3 128 32.0
MSTRG.21082 Avicennia marina HOM05D000980 ORTHO05D000649 3.9e-07 58.9 147 27.9
SalBow3G1483 Salvia bowleyana HOM05D000980 ORTHO05D000649 3.9e-07 58.9 144 30.6
Sed0014685 Sechium edule HOM05D000980 ORTHO05D000649 3.9e-07 58.9 128 31.2
HPP92_026747 Vanilla planifolia HOM05D000733 ORTHO05D000649 3.9e-07 58.9 148 31.1
VMungo0647G0287 Vigna mungo HOM05D002540 ORTHO05D002672 3.9e-07 58.9 127 25.2
Lsat_1_v5_gn_2_38441 Lactuca sativa HOM05D002687 ORTHO05D002052 6.6e-07 58.2 151 27.8
CSS0050252 Camellia sinensis var. sinensis HOM05D002137 ORTHO05D002144 8.6e-07 57.8 85 34.1
Cfa021147 Carpinus fangiana HOM05D000980 ORTHO05D000649 8.6e-07 57.8 147 29.3
AUR62041321 Chenopodium quinoa HOM05D000980 ORTHO05D000649 8.6e-07 57.8 135 30.4
PSO063G1903 Papaver somniferum HOM05D000733 ORTHO05D000649 8.6e-07 57.8 148 29.7
SalBow3G2018 Salvia bowleyana HOM05D002687 ORTHO05D002052 8.6e-07 57.8 140 28.6
SGA_v2.0_scaffold637G53306 Striga asiatica HOM05D002687 ORTHO05D002052 8.6e-07 57.8 140 27.9
Glyma.07G009700 Glycine max HOM05D002137 ORTHO05D002144 1.5e-06 57.0 105 31.4
Sc21g0006860 Simmondsia chinensis HOM05D002687 ORTHO05D002052 1.5e-06 57.0 151 27.2
AUR62024021 Chenopodium quinoa HOM05D000980 ORTHO05D000649 1.9e-06 56.6 135 30.4
Gohir.D05G087600 Gossypium hirsutum HOM05D000733 ORTHO05D000649 1.9e-06 56.6 147 28.6
AUR62031792 Chenopodium quinoa HOM05D002687 ORTHO05D002052 2.5e-06 56.2 150 28.0
Gohir.A05G085600 Gossypium hirsutum HOM05D000733 ORTHO05D000649 2.5e-06 56.2 147 28.6
Lsat_1_v5_gn_6_41740 Lactuca sativa HOM05D000733 ORTHO05D000649 2.5e-06 56.2 132 27.3
ATR0751G089 Amborella trichopoda HOM05D002540 ORTHO05D002672 3.3e-06 55.8 127 24.4
Aqoxy2G01615 Aquilegia oxysepala HOM05D000733 ORTHO05D000649 3.3e-06 55.8 121 30.6
AUR62001543 Chenopodium quinoa HOM05D002687 ORTHO05D002052 3.3e-06 55.8 150 27.3
Gorai.009G089500 Gossypium raimondii HOM05D000733 ORTHO05D000649 3.3e-06 55.8 147 28.6
TAR636G0437 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.3e-06 55.8 148 28.4
TAR636G3204 Trochodendron aralioides HOM05D002687 ORTHO05D002052 3.3e-06 55.8 148 28.4
Glyma.14G010800 Glycine max HOM05D002540 ORTHO05D002672 4.3e-06 55.5 127 23.6
DCAR_013440 Daucus carota HOM05D002687 ORTHO05D002052 5.6e-06 55.1 132 31.1
Oeu035584.1 Olea europaea HOM05D002687 ORTHO05D002052 5.6e-06 55.1 136 29.4
CSS0030865 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 7.3e-06 54.7 149 27.5
CSS0032031 Camellia sinensis var. sinensis HOM05D002687 ORTHO05D002052 7.3e-06 54.7 149 27.5
Glyma.02G303100 Glycine max HOM05D002540 ORTHO05D002672 7.3e-06 54.7 127 22.8
MD09G1193000 Malus domestica HOM05D002137 ORTHO05D002144 7.3e-06 54.7 86 31.4
Nn1g01999 Nelumbo nucifera HOM05D000973 ORTHO05D000652 7.3e-06 54.7 142 27.5
QL01p014798 Quercus lobata HOM05D000980 ORTHO05D000649 7.3e-06 54.7 146 26.7
Sp4g10070 Schrenkiella parvula HOM05D002687 ORTHO05D002052 7.3e-06 54.7 129 24.0
A07p18100 Brassica napus HOM05D002687 ORTHO05D002052 9.6e-06 54.3 137 25.5
AUR62023990 Chenopodium quinoa HOM05D002687 ORTHO05D002052 9.6e-06 54.3 150 26.0


User provided reference genes

Program Settings