Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 3.1e-87 325.1 161 100.0
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 2.4e-60 235.7 146 75.3
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.7e-59 232.3 146 75.3
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.5e-59 231.9 147 73.5
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.3e-58 229.9 146 71.9
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.7e-58 229.6 159 70.4
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 3.0e-58 228.8 149 71.1
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 8.7e-58 227.3 149 70.5
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-57 226.5 146 72.6
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.5e-57 226.5 153 69.9
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.5e-57 225.7 146 72.6
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 3.3e-57 225.3 146 74.0
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 5.6e-57 224.6 149 70.5
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 1.3e-56 223.4 149 71.1
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-56 223.4 149 70.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.8e-56 221.5 146 69.9
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 6.2e-56 221.1 146 71.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 8.1e-56 220.7 146 69.2
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 1.1e-55 220.3 150 70.7
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.4e-55 219.9 149 69.8
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.4e-55 219.9 154 67.5
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.4e-55 219.2 149 70.5
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 6.9e-55 217.6 146 68.5
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 6.9e-55 217.6 147 72.1
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 9.0e-55 217.2 147 70.1
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 1.2e-54 216.9 146 69.9
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.2e-54 216.9 146 69.2
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.5e-54 216.5 149 68.5
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.0e-54 216.1 139 73.4
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 2.0e-54 216.1 147 71.4
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 2.6e-54 215.7 150 69.3
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 3.4e-54 215.3 154 66.9
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 7.6e-54 214.2 147 67.3
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 9.9e-54 213.8 150 67.3
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 9.9e-54 213.8 150 72.0
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 9.9e-54 213.8 145 70.3
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 1.3e-53 213.4 123 82.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.3e-53 213.4 146 67.1
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.2e-53 212.6 149 65.1
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.9e-53 212.2 148 67.6
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 4.9e-53 211.5 123 82.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 6.4e-53 211.1 146 68.5
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.4e-52 209.9 143 69.2
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 5.4e-52 208.0 146 68.5
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 7.1e-52 207.6 161 65.8
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 9.3e-52 207.2 148 67.6
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.6e-51 206.5 141 70.2
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.6e-51 206.5 147 68.0
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 3.5e-51 205.3 152 66.4
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 4.6e-51 204.9 146 65.8
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 4.6e-51 204.9 142 69.7
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.3e-50 203.4 146 65.8
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 2.3e-50 202.6 148 67.6
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.0e-50 202.2 147 66.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 3.0e-50 202.2 147 66.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.9e-50 201.8 147 66.7
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 6.7e-50 201.1 154 63.0
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 8.7e-50 200.7 145 67.6
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 1.1e-49 200.3 147 65.3
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.1e-49 200.3 168 63.1
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.5e-49 199.9 147 68.7
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 3.3e-49 198.7 145 64.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 4.3e-49 198.4 148 64.2
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 5.6e-49 198.0 149 65.8
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 5.6e-49 198.0 149 67.1
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 7.4e-49 197.6 148 65.5
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.6e-48 196.4 149 65.1
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.1e-48 196.1 149 65.8
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.1e-48 196.1 149 65.8
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 2.1e-48 196.1 149 66.4
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.8e-48 195.7 148 64.2
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 3.7e-48 195.3 145 65.5
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 4.8e-48 194.9 146 68.5
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 6.2e-48 194.5 149 65.8
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 6.2e-48 194.5 145 66.9
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 8.1e-48 194.1 149 64.4
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.1e-47 193.7 148 63.5
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 1.8e-47 193.0 146 62.3
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 2.4e-47 192.6 147 61.2
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 3.1e-47 192.2 149 65.1
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 4.0e-47 191.8 148 62.8
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 9.9e-46 187.2 150 62.0
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 2.2e-45 186.0 145 63.4
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 4.9e-45 184.9 155 61.9
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.9e-44 183.0 146 58.9
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 4.2e-44 181.8 146 61.0
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.5e-43 178.7 133 65.4
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 7.9e-43 177.6 139 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 3.0e-42 175.6 145 60.7
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 8.2e-40 167.5 125 65.6
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-37 160.2 114 65.8
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 4.6e-35 151.8 147 52.4
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 1.0e-34 150.6 109 61.5
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 7.4e-33 144.4 147 53.7
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 2.4e-31 139.4 161 47.2
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 6.9e-31 137.9 149 51.7
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.3e-16 90.5 74 56.8
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.3e-16 90.5 74 56.8
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.7e-16 90.1 72 59.7
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.1e-15 87.4 73 60.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.2e-14 84.0 47 85.1
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 2.2e-13 79.7 60 61.7
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 3.8e-13 79.0 127 40.2
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 7.2e-12 74.7 49 75.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.0e-10 69.3 137 37.2
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 3.0e-10 69.3 38 86.8
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.0e-09 66.6 37 83.8
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 7.4e-09 64.7 155 31.6
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.3e-08 63.9 153 28.8
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.7e-08 63.5 49 51.0
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.4e-07 60.5 138 31.9
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 3.1e-07 59.3 158 29.7
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 5.3e-07 58.5 161 28.0
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.0e-07 58.2 134 28.4
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 9.1e-07 57.8 145 31.0
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.6e-06 57.0 157 29.9


User provided reference genes

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