Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0005910 Simmondsia chinensis HOM05D005464 ORTHO05D006803 2.1e-115 419.1 213 100.0
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 6.5e-77 291.2 216 66.7
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.6e-75 286.6 216 64.8
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 1.9e-73 279.6 216 62.0
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 2.5e-68 262.7 211 63.0
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 4.3e-65 251.9 214 57.9
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 4.8e-64 248.4 217 54.8
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 6.3e-64 248.1 216 54.2
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 6.9e-63 244.6 213 55.9
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 6.9e-63 244.6 217 54.4
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 1.5e-62 243.4 212 55.7
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 2.0e-62 243.0 217 53.9
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.0e-62 243.0 217 53.9
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 2.6e-62 242.7 219 57.5
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 2.6e-62 242.7 213 53.1
QL05p029765 Quercus lobata HOM05D005464 ORTHO05D006803 3.4e-62 242.3 212 54.7
QL05p030112 Quercus lobata HOM05D005464 ORTHO05D006803 3.4e-62 242.3 212 54.7
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 4.5e-62 241.9 213 53.5
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 1.3e-61 240.4 213 54.9
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 3.8e-61 238.8 209 55.0
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 5.0e-61 238.4 218 54.6
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 8.5e-61 237.7 212 54.2
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 8.5e-61 237.7 211 55.0
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 2.5e-60 236.1 215 53.5
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 3.2e-60 235.7 212 54.2
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 4.2e-60 235.3 218 54.6
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 5.5e-60 235.0 211 52.1
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 1.2e-59 233.8 211 54.5
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 1.2e-59 233.8 210 54.3
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 2.1e-59 233.0 211 51.7
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 2.7e-59 232.6 214 54.2
Nn2g12091 Nelumbo nucifera HOM05D000467 ORTHO05D000379 3.6e-59 232.3 211 53.1
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 6.1e-59 231.5 211 51.7
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 6.1e-59 231.5 209 51.7
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 1.0e-58 230.7 211 51.7
Oeu045134.1 Olea europaea HOM05D005464 ORTHO05D006803 1.0e-58 230.7 211 55.0
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 1.4e-58 230.3 224 50.4
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 5.1e-58 228.4 220 53.6
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 8.8e-58 227.6 216 52.3
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 2.0e-57 226.5 209 54.1
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 3.3e-57 225.7 211 50.2
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 9.7e-57 224.2 211 50.7
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 1.3e-56 223.8 212 50.0
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 2.2e-56 223.0 214 52.3
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 2.8e-56 222.6 213 50.2
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 8.2e-56 221.1 218 50.5
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 8.2e-56 221.1 220 51.4
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 1.1e-55 220.7 215 50.7
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 1.1e-55 220.7 216 51.9
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 3.1e-55 219.2 215 51.6
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 3.1e-55 219.2 209 52.6
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 1.2e-54 217.2 216 52.3
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 1.2e-54 217.2 216 52.3
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 1.6e-54 216.9 212 46.7
Atru.chr1.2936 Acer truncatum HOM05D005464 ORTHO05D006803 7.7e-54 214.5 214 50.5
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 7.7e-54 214.5 211 49.3
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.0e-53 214.2 218 50.5
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 1.7e-53 213.4 236 47.5
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 2.2e-53 213.0 191 55.5
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 6.5e-53 211.5 209 50.2
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 6.5e-53 211.5 216 50.9
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 8.5e-53 211.1 212 50.0
Lj9P500T36 Lonicera japonica HOM05D005464 ORTHO05D006803 1.5e-52 210.3 204 51.5
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 2.5e-52 209.5 213 48.8
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 3.2e-52 209.1 211 50.2
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 3.2e-52 209.1 213 48.8
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 1.2e-51 207.2 213 50.7
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 1.6e-51 206.8 209 49.8
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 2.7e-51 206.1 213 48.8
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 2.7e-51 206.1 213 50.7
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.8e-50 203.4 218 47.7
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 5.2e-50 201.8 212 48.6
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 5.2e-50 201.8 213 49.8
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 2.0e-49 199.9 213 50.2
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 3.3e-49 199.1 211 46.9
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 4.4e-49 198.7 213 47.4
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 5.7e-49 198.4 213 46.9
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 5.7e-49 198.4 214 45.3
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 1.4e-47 193.7 208 46.2
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 1.4e-47 193.7 208 46.2
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 1.4e-47 193.7 208 46.2
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.4e-47 193.7 211 46.9
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 1.4e-47 193.7 212 47.6
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 2.4e-47 193.0 213 47.4
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 2.4e-47 193.0 213 47.4
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 2.4e-47 193.0 215 44.7
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 4.1e-47 192.2 208 45.7
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 5.3e-47 191.8 213 44.1
Cc04_g04410 Coffea canephora HOM05D005464 ORTHO05D006803 7.0e-47 191.4 190 51.6
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 7.0e-47 191.4 213 44.6
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.2e-46 190.7 213 45.5
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 1.2e-46 190.7 216 42.1
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.6e-46 190.3 211 46.9
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 2.7e-46 189.5 209 46.4
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 2.7e-46 189.5 213 46.9
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 2.7e-46 189.5 213 46.9
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.5e-46 189.1 212 43.9
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 5.9e-46 188.3 209 44.0
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 1.0e-45 187.6 211 44.1
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 1.0e-45 187.6 214 44.4
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 6.5e-45 184.9 212 44.3
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 8.5e-45 184.5 211 45.0
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 1.9e-44 183.3 212 43.9
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 2.5e-44 183.0 213 44.1
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.6e-43 180.3 213 45.1
VMungo1127G1748 Vigna mungo HOM05D005464 ORTHO05D006803 2.7e-43 179.5 202 46.0
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 6.1e-43 178.3 241 42.7
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 3.4e-41 172.6 220 43.2
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 1.4e-39 167.2 206 43.7
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 3.1e-39 166.0 210 41.4
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 2.0e-38 163.3 208 41.8
HPP92_010901 Vanilla planifolia HOM05D005464 ORTHO05D006803 4.5e-38 162.2 206 39.8
BcaC05g25495 Brassica carinata HOM05D005464 ORTHO05D006803 1.3e-37 160.6 182 44.5
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 6.5e-37 158.3 219 38.8
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 1.5e-36 157.1 198 40.9
Pp3c13_16980 Physcomitrium patens HOM05D005464 ORTHO05D006803 6.8e-34 148.3 212 35.4
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 2.4e-31 139.8 212 32.5
TAR383G0332 Trochodendron aralioides HOM05D005464 ORTHO05D006803 5.4e-31 138.7 125 50.4
Psat6g000160 Pisum sativum HOM05D005464 ORTHO05D006803 2.9e-24 116.3 136 44.9
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 5.4e-23 112.1 112 43.8
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 7.0e-23 111.7 94 57.4
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 1.1e-20 104.4 93 59.1
AL2G41440 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 1.5e-20 104.0 133 41.4
CBR_g38673 Chara braunii HOM05D005464 ORTHO05D006803 6.2e-19 98.6 198 32.8
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.0e-18 97.8 120 45.8
Nn1g00750 Nelumbo nucifera HOM05D005464 ORTHO05D006803 5.4e-15 85.5 84 54.8
SEGI_27934 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.3e-13 80.9 193 30.6
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.9e-13 79.3 203 27.6
SEGI_39315 Sequoiadendron giganteum HOM05D005464 ORTHO05D006803 1.2e-11 74.3 90 44.4
Medtr2g103890 Medicago truncatula HOM05D005464 ORTHO05D006803 1.3e-08 64.3 86 39.5
DCAR_027392 Daucus carota HOM05D001741 ORTHO05D002196 1.7e-08 63.9 199 29.6
arahy.Tifrunner.gnm1.ann1.78AWB5 Arachis hypogaea HOM05D001741 ORTHO05D002196 2.2e-08 63.5 182 26.9
MCO15G016 Micromonas commoda HOM05D014937 ORTHO05D016224 2.2e-08 63.5 205 27.3
FvH4_4g31760 Fragaria vesca HOM05D001741 ORTHO05D002196 3.7e-08 62.8 182 27.5
FAN12G1673 Fragaria x ananassa HOM05D001741 ORTHO05D002196 3.7e-08 62.8 182 27.5
arahy.Tifrunner.gnm1.ann1.075A5E Arachis hypogaea HOM05D001741 ORTHO05D002196 8.3e-08 61.6 182 26.4
CBR_g22419 Chara braunii HOM05D001741 ORTHO05D002196 8.3e-08 61.6 165 30.9
Lj2g0016570 Lotus japonicus HOM05D001741 ORTHO05D002196 8.3e-08 61.6 182 27.5
CBR_g50398 Chara braunii HOM05D001741 ORTHO05D002196 1.1e-07 61.2 151 25.8
Lalb_Chr17g0340421 Lupinus albus HOM05D001741 ORTHO05D002196 1.4e-07 60.8 185 29.7
RcHm_v2.0_Chr4g0440361 Rosa chinensis HOM05D001741 ORTHO05D002196 3.2e-07 59.7 188 25.5
vmacro16332 Vaccinium macrocarpon HOM05D001741 ORTHO05D002196 4.1e-07 59.3 145 26.2
FAN17G1528 Fragaria x ananassa HOM05D001741 ORTHO05D002196 5.4e-07 58.9 182 26.4
FAN22G2407 Fragaria x ananassa HOM05D001741 ORTHO05D002196 5.4e-07 58.9 184 26.6
Nitab4.5_0002752g0140 Nicotiana tabacum HOM05D001741 ORTHO05D002196 9.2e-07 58.2 197 27.9
RcHm_v2.0_Chr4g0440371 Rosa chinensis HOM05D001741 ORTHO05D002196 9.2e-07 58.2 185 26.5
TPR.G13768 Trifolium pratense HOM05D001741 ORTHO05D002196 9.2e-07 58.2 184 26.1
Actinidia25580 Actinidia chinensis HOM05D001741 ORTHO05D002196 1.2e-06 57.8 136 30.9
Rhsim12G0130600 Rhododendron simsii HOM05D001741 ORTHO05D002196 1.2e-06 57.8 182 25.8
MD13G1077700 Malus domestica HOM05D001741 ORTHO05D002196 1.6e-06 57.4 146 27.4
Peaxi162Scf00089g00622 Petunia axillaris HOM05D001741 ORTHO05D002196 2.1e-06 57.0 147 29.9
TAR371G0100 Trochodendron aralioides HOM05D001741 ORTHO05D002196 2.7e-06 56.6 201 24.9
HanXRQChr17g0544801 Helianthus annuus HOM05D001741 ORTHO05D002196 3.5e-06 56.2 132 28.0
Lsat_1_v5_gn_3_51321 Lactuca sativa HOM05D001741 ORTHO05D002196 3.5e-06 56.2 144 25.0
Ca_04749_v3 Cicer arietinum L. HOM05D001741 ORTHO05D002196 4.6e-06 55.8 182 25.8
Medtr5g038570 Medicago truncatula HOM05D001741 ORTHO05D002196 4.6e-06 55.8 190 24.7
Haze_12052 Corylus avellana HOM05D001741 ORTHO05D002196 6.0e-06 55.5 184 26.6
Rhsim08G0189400 Rhododendron simsii HOM05D001741 ORTHO05D002196 6.0e-06 55.5 136 29.4
RhsimUnG0231700 Rhododendron simsii HOM05D001741 ORTHO05D002196 6.0e-06 55.5 136 29.4
Zm00001eb160610 Zea mays HOM05D001741 ORTHO05D002196 6.0e-06 55.5 185 27.6
MD13G1077800 Malus domestica HOM05D001741 ORTHO05D002196 7.8e-06 55.1 200 25.0
Oeu000634.1 Olea europaea HOM05D001741 ORTHO05D002196 7.8e-06 55.1 199 25.6


User provided reference genes

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