Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0005900 Simmondsia chinensis HOM05D005464 ORTHO05D006803 3.3e-74 281.6 139 100.0
Prupe.3G087600 Prunus persica HOM05D005464 ORTHO05D006803 1.2e-50 203.4 132 72.7
MD17G1212300 Malus domestica HOM05D005464 ORTHO05D006803 9.8e-50 200.3 132 72.7
RcHm_v2.0_Chr2g0135251 Rosa chinensis HOM05D005464 ORTHO05D006803 9.8e-50 200.3 141 72.3
Manes.11G057000 Manihot esculenta HOM05D005464 ORTHO05D006803 2.2e-49 199.1 131 74.8
Migut.I00762 Erythranthe guttata HOM05D005464 ORTHO05D006803 4.9e-49 198.0 135 69.6
Cfa001959 Carpinus fangiana HOM05D005464 ORTHO05D006803 8.3e-49 197.2 132 73.5
Atru.chr1.2934 Acer truncatum HOM05D005464 ORTHO05D006803 1.4e-48 196.4 137 69.3
PGR031G2541 Punica granatum HOM05D005464 ORTHO05D006803 1.4e-48 196.4 133 71.4
Ciclev10026304m.g Citrus clementina HOM05D005464 ORTHO05D006803 2.4e-48 195.7 136 70.6
FAN09G2673 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.4e-48 195.7 139 71.2
FAN14G5059 Fragaria x ananassa HOM05D005464 ORTHO05D006803 2.4e-48 195.7 139 71.2
Lsat_1_v5_gn_4_89921 Lactuca sativa HOM05D005464 ORTHO05D006803 2.4e-48 195.7 135 69.6
FvH4_6g29660 Fragaria vesca HOM05D005464 ORTHO05D006803 3.2e-48 195.3 136 72.8
ECA232G3027 Erigeron canadensis HOM05D005464 ORTHO05D006803 5.4e-48 194.5 134 70.1
HanXRQChr16g0500301 Helianthus annuus HOM05D005464 ORTHO05D006803 5.4e-48 194.5 135 69.6
TWI12G0099 Tripterygium wilfordii HOM05D005464 ORTHO05D006803 5.4e-48 194.5 133 72.9
Cpa.g.sc10.270 Carica papaya HOM05D005464 ORTHO05D006803 9.2e-48 193.7 134 73.1
CANSAT56G0380 Cannabis sativa HOM05D005464 ORTHO05D006803 1.2e-47 193.4 142 70.4
Haze_16562 Corylus avellana HOM05D005464 ORTHO05D006803 1.6e-47 193.0 133 72.2
Actinidia15983 Actinidia chinensis HOM05D005464 ORTHO05D006803 2.7e-47 192.2 133 72.9
Eucgr.J03066 Eucalyptus grandis HOM05D005464 ORTHO05D006803 2.7e-47 192.2 129 73.6
FAN05G5161 Fragaria x ananassa HOM05D005464 ORTHO05D006803 3.5e-47 191.8 137 71.5
Hund06557 Selenicereus undatus HOM05D005464 ORTHO05D006803 3.5e-47 191.8 130 71.5
GSVIVG01017342001 Vitis vinifera HOM05D005464 ORTHO05D006803 4.6e-47 191.4 129 73.6
CSS0011845 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 7.8e-47 190.7 135 71.1
vmacro16896 Vaccinium macrocarpon HOM05D005464 ORTHO05D006803 7.8e-47 190.7 134 70.9
MSTRG.22747 Avicennia marina HOM05D005464 ORTHO05D006803 1.0e-46 190.3 133 71.4
CiPaw.02G157400 Carya illinoinensis HOM05D005464 ORTHO05D006803 1.3e-46 189.9 128 71.9
Ca_01055_v3 Cicer arietinum L. HOM05D005464 ORTHO05D006803 1.3e-46 189.9 131 71.8
TAR383G0924 Trochodendron aralioides HOM05D005464 ORTHO05D006803 1.7e-46 189.5 133 72.2
EL10Ac9g21898 Beta vulgaris HOM05D005464 ORTHO05D006803 2.3e-46 189.1 124 75.8
CSS0036664 Camellia sinensis var. sinensis HOM05D005464 ORTHO05D006803 2.3e-46 189.1 135 70.4
CsaV3_4G001710 Cucumis sativus L. HOM05D005464 ORTHO05D006803 3.0e-46 188.7 135 69.6
TPR.G37199 Trifolium pratense HOM05D005464 ORTHO05D006803 3.0e-46 188.7 130 71.5
MELO3C017863.2 Cucumis melo HOM05D005464 ORTHO05D006803 3.9e-46 188.3 135 69.6
AUR62016335 Chenopodium quinoa HOM05D005464 ORTHO05D006803 5.0e-46 188.0 128 71.1
Nitab4.5_0006769g0010 Nicotiana tabacum HOM05D005464 ORTHO05D006803 5.0e-46 188.0 132 69.7
Medtr2g103910 Medicago truncatula HOM05D005464 ORTHO05D006803 6.6e-46 187.6 136 68.4
Nitab4.5_0000373g0080 Nicotiana tabacum HOM05D005464 ORTHO05D006803 6.6e-46 187.6 132 70.5
Aqoxy7G02293 Aquilegia oxysepala HOM05D005464 ORTHO05D006803 8.6e-46 187.2 136 67.6
PGSC0003DMG400028509 Solanum tuberosum HOM05D005464 ORTHO05D006803 8.6e-46 187.2 135 68.9
Glyma.13G365800 Glycine max HOM05D005464 ORTHO05D006803 1.1e-45 186.8 131 70.2
Solyc06g068160.3 Solanum lycopersicum HOM05D005464 ORTHO05D006803 1.1e-45 186.8 135 68.9
Rhsim12G0191100 Rhododendron simsii HOM05D005464 ORTHO05D006803 1.9e-45 186.0 133 70.7
Sp1g13650 Schrenkiella parvula HOM05D005464 ORTHO05D006803 1.9e-45 186.0 135 67.4
Psat5g302720 Pisum sativum HOM05D005464 ORTHO05D006803 3.3e-45 185.3 136 66.9
Sopen06g025430 Solanum pennellii HOM05D005464 ORTHO05D006803 3.3e-45 185.3 135 68.1
CAN.G1503.8 Capsicum annuum HOM05D005464 ORTHO05D006803 4.3e-45 184.9 137 68.6
Lalb_Chr14g0373811 Lupinus albus HOM05D005464 ORTHO05D006803 5.6e-45 184.5 138 65.9
THA.LOC104812511 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 7.3e-45 184.1 133 67.7
ClCG07G012450 Citrullus lanatus HOM05D005464 ORTHO05D006803 1.2e-44 183.3 133 69.9
DCAR_021346 Daucus carota HOM05D005464 ORTHO05D006803 1.2e-44 183.3 133 69.2
AT1G15330 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 1.6e-44 183.0 135 66.7
Lj3g0027830 Lotus japonicus HOM05D005464 ORTHO05D006803 2.1e-44 182.6 136 68.4
Zm00001eb232620 Zea mays HOM05D005464 ORTHO05D006803 2.1e-44 182.6 130 69.2
Os02g0158900 Oryza sativa ssp. japonica HOM05D005464 ORTHO05D006803 2.8e-44 182.2 133 69.2
Phvul.005G178300 Phaseolus vulgaris HOM05D005464 ORTHO05D006803 2.8e-44 182.2 131 71.0
SGA_v2.0_scaffold5G02698 Striga asiatica HOM05D005464 ORTHO05D006803 2.8e-44 182.2 133 68.4
Nn8g39510 Nelumbo nucifera HOM05D005464 ORTHO05D006803 3.6e-44 181.8 129 68.2
unitig_0.g1114 Utricularia gibba HOM05D005464 ORTHO05D006803 6.2e-44 181.0 133 64.7
BcaC05g25470 Brassica carinata HOM05D005464 ORTHO05D006803 8.0e-44 180.6 135 65.2
COL.COLO4_11947 Corchorus olitorius HOM05D005464 ORTHO05D006803 8.0e-44 180.6 131 71.0
VMungo1080G0510 Vigna mungo HOM05D005464 ORTHO05D006803 1.0e-43 180.3 131 68.7
A06p11340 Brassica napus HOM05D005464 ORTHO05D006803 1.8e-43 179.5 135 64.4
BraA06t24313Z Brassica rapa HOM05D005464 ORTHO05D006803 1.8e-43 179.5 135 64.4
Carub.0001s1508 Capsella rubella HOM05D005464 ORTHO05D006803 1.8e-43 179.5 135 66.7
BolC5t30083H Brassica oleracea HOM05D005464 ORTHO05D006803 3.1e-43 178.7 136 63.2
Glyma.15G007300 Glycine max HOM05D005464 ORTHO05D006803 3.1e-43 178.7 131 66.4
AL1G27420 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 4.0e-43 178.3 135 65.2
Sed0012798 Sechium edule HOM05D005464 ORTHO05D006803 4.0e-43 178.3 137 65.0
PSO017G6540 Papaver somniferum HOM05D005464 ORTHO05D006803 8.9e-43 177.2 138 65.2
CARHR015860 Cardamine hirsuta HOM05D005464 ORTHO05D006803 1.2e-42 176.8 135 63.7
C05p13460 Brassica napus HOM05D005464 ORTHO05D006803 1.5e-42 176.4 136 62.5
Eucgr.F03878 Eucalyptus grandis HOM05D005464 ORTHO05D006803 3.4e-42 175.3 135 65.9
Thhalv10008048m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 9.8e-42 173.7 135 62.2
PSO170G0224 Papaver somniferum HOM05D005464 ORTHO05D006803 9.8e-42 173.7 140 62.9
Thecc.06G025100 Theobroma cacao HOM05D000467 ORTHO05D000379 9.8e-42 173.7 131 67.2
Lalb_Chr22g0350841 Lupinus albus HOM05D005464 ORTHO05D006803 1.3e-41 173.3 132 62.9
Aa31LG7G100 Aethionema arabicum HOM05D005464 ORTHO05D006803 2.2e-41 172.6 131 64.1
Gohir.A05G123300 Gossypium hirsutum HOM05D005464 ORTHO05D006803 4.9e-41 171.4 131 64.9
HPP92_016981 Vanilla planifolia HOM05D005464 ORTHO05D006803 8.3e-41 170.6 130 63.8
Gorai.009G128200 Gossypium raimondii HOM05D005464 ORTHO05D006803 3.2e-40 168.7 131 64.1
MBI14_g16402_MAGBIO Magnolia biondii HOM05D005464 ORTHO05D006803 4.1e-40 168.3 138 63.0
PGR102G0885 Punica granatum HOM05D005464 ORTHO05D006803 2.0e-39 166.0 133 61.7
Peaxi162Scf00207g00638 Petunia axillaris HOM05D005464 ORTHO05D006803 6.0e-39 164.5 122 66.4
ATR0800G035 Amborella trichopoda HOM05D005464 ORTHO05D006803 1.3e-38 163.3 124 66.1
THA.LOC104812509 Tarenaya hassleriana HOM05D005464 ORTHO05D006803 3.0e-38 162.2 132 59.8
AT1G80090 Arabidopsis thaliana HOM05D005464 ORTHO05D006803 8.6e-38 160.6 131 62.6
AUR62011516 Chenopodium quinoa HOM05D005464 ORTHO05D006803 8.6e-38 160.6 102 74.5
Gohir.D05G124200 Gossypium hirsutum HOM05D005464 ORTHO05D006803 1.6e-36 156.4 131 62.6
SHI11227 Sapria himalayana HOM05D005464 ORTHO05D006803 2.1e-36 156.0 122 64.8
Thhalv10019455m.g Eutrema salsugineum HOM05D005464 ORTHO05D006803 4.0e-35 151.8 131 58.8
Dinv30606 Davidia involucrata HOM05D005464 ORTHO05D006803 1.5e-34 149.8 113 69.9
AagrBONN_evm.TU.Sc2ySwM_344.2189 Anthoceros agrestis HOM05D005464 ORTHO05D006803 3.4e-34 148.7 126 55.6
AL2G41450 Arabidopsis lyrata HOM05D005464 ORTHO05D006803 3.4e-34 148.7 145 55.2
BcaC08g47570 Brassica carinata HOM05D005464 ORTHO05D006803 7.5e-34 147.5 138 56.5
C06p54250 Brassica napus HOM05D005464 ORTHO05D006803 7.5e-34 147.5 138 56.5
BolC6t40438H Brassica oleracea HOM05D005464 ORTHO05D006803 7.5e-34 147.5 138 56.5
AagrBONN_evm.TU.Sc2ySwM_368.1642 Anthoceros agrestis HOM05D005464 ORTHO05D006803 4.9e-33 144.8 130 51.5
BcaB02g08721 Brassica carinata HOM05D005464 ORTHO05D006803 4.9e-33 144.8 141 53.9
Mapoly0007s0086 Marchantia polymorpha HOM05D005464 ORTHO05D006803 1.1e-32 143.7 130 54.6
arahy.Tifrunner.gnm1.ann1.JVJR89 Arachis hypogaea HOM05D005464 ORTHO05D006803 3.2e-32 142.1 108 67.6
arahy.Tifrunner.gnm1.ann1.Y6ZEHB Arachis hypogaea HOM05D005464 ORTHO05D006803 3.2e-32 142.1 108 67.6
Pp3c3_23830 Physcomitrium patens HOM05D005464 ORTHO05D006803 5.4e-32 141.4 135 54.8
A07p45420 Brassica napus HOM05D005464 ORTHO05D006803 9.2e-32 140.6 138 52.9
BraA07t32046Z Brassica rapa HOM05D005464 ORTHO05D006803 9.2e-32 140.6 138 52.9
SMO201G0050 Selaginella moellendorffii HOM05D005464 ORTHO05D006803 1.2e-31 140.2 130 55.4
Psat1g035880 Pisum sativum HOM05D005464 ORTHO05D006803 4.7e-28 128.3 103 63.1
CARHR074410 Cardamine hirsuta HOM05D005464 ORTHO05D006803 6.8e-27 124.4 98 61.2
Sp5g35710 Schrenkiella parvula HOM05D005464 ORTHO05D006803 3.4e-26 122.1 98 58.2
Hma1.2p1_1144F.1_g261310 Hydrangea macrophylla HOM05D005464 ORTHO05D006803 1.9e-21 106.3 73 69.9
CBR_g24374 Chara braunii HOM05D005464 ORTHO05D006803 1.6e-20 103.2 130 40.8
QL05p029759 Quercus lobata HOM05D005464 ORTHO05D006803 1.6e-20 103.2 125 48.8
QL05p030118 Quercus lobata HOM05D005464 ORTHO05D006803 1.6e-20 103.2 125 48.8
Duzib160G0683 Durio zibethinus HOM05D005464 ORTHO05D006803 3.6e-20 102.1 77 67.5
Carub.0002s2743 Capsella rubella HOM05D005464 ORTHO05D006803 1.8e-19 99.8 75 61.3
PGR102G1999 Punica granatum HOM05D005464 ORTHO05D006803 8.4e-17 90.9 76 64.5
Aa31LG4G370 Aethionema arabicum HOM05D005464 ORTHO05D006803 9.3e-16 87.4 74 54.1
Psat6g211360 Pisum sativum HOM05D005464 ORTHO05D006803 7.1e-08 61.2 52 57.7
Hma1.2p1_0090F.1_g046010 Hydrangea macrophylla HOM05D005464 ORTHO05D048341 1.7e-06 56.6 29 82.8
Hma1.2p1_0090F.1_g046015 Hydrangea macrophylla HOM05D005464 ORTHO05D048341 1.7e-06 56.6 29 82.8


User provided reference genes

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