Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0005160 Simmondsia chinensis HOM05D004411 ORTHO05D005569 6.6e-180 634.0 345 100.0
Hund07317 Selenicereus undatus HOM05D004411 ORTHO05D005569 4.0e-92 342.4 368 56.5
Potri.011G136400 Populus trichocarpa HOM05D004411 ORTHO05D005569 7.5e-91 338.2 345 60.0
EL10Ac9g22002 Beta vulgaris HOM05D004411 ORTHO05D005569 5.4e-89 332.0 347 59.4
Prupe.4G208500 Prunus persica HOM05D004411 ORTHO05D005569 2.0e-88 330.1 337 61.1
Sabra11G0122500 Salix brachista HOM05D004411 ORTHO05D005569 2.0e-88 330.1 360 56.9
GSVIVG01008286001 Vitis vinifera HOM05D004411 ORTHO05D005569 2.0e-88 330.1 347 59.1
Dinv40733 Davidia involucrata HOM05D004411 ORTHO05D005569 3.5e-88 329.3 338 60.9
Hma1.2p1_0938F.1_g239200 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 5.9e-88 328.6 354 58.2
Ciclev10008629m.g Citrus clementina HOM05D004411 ORTHO05D005569 2.2e-87 326.6 343 57.7
QL08p012116 Quercus lobata HOM05D004411 ORTHO05D005569 1.9e-86 323.6 287 66.2
QL08p011929 Quercus lobata HOM05D004411 ORTHO05D005569 4.2e-86 322.4 287 65.9
Atru.chr2.3274 Acer truncatum HOM05D004411 ORTHO05D005569 6.1e-85 318.5 383 52.7
TWI38G0098 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 1.0e-84 317.8 350 58.0
RcHm_v2.0_Chr5g0037971 Rosa chinensis HOM05D004411 ORTHO05D005569 4.0e-84 315.8 343 58.0
Dinv22283 Davidia involucrata HOM05D004411 ORTHO05D005569 5.2e-84 315.5 336 58.6
Thecc.07G044400 Theobroma cacao HOM05D004411 ORTHO05D005569 1.5e-83 313.9 352 55.4
AUR62000402 Chenopodium quinoa HOM05D004411 ORTHO05D005569 7.5e-83 311.6 346 56.4
Gohir.A01G077000 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.7e-82 309.3 332 56.9
Gohir.D01G064500 Gossypium hirsutum HOM05D004411 ORTHO05D005569 3.7e-82 309.3 337 55.2
Gorai.002G085400 Gossypium raimondii HOM05D004411 ORTHO05D005569 3.7e-82 309.3 337 55.2
Atru.chr7.1306 Acer truncatum HOM05D004411 ORTHO05D005569 1.1e-81 307.8 276 63.4
Duzib213G0043 Durio zibethinus HOM05D004411 ORTHO05D005569 1.1e-81 307.8 339 56.0
CANSAT56G2724 Cannabis sativa HOM05D004411 ORTHO05D005569 1.4e-81 307.4 353 55.0
CSS0013783 Camellia sinensis var. sinensis HOM05D004411 ORTHO05D005569 2.4e-81 306.6 341 55.7
FvH4_3g22120 Fragaria vesca HOM05D004411 ORTHO05D005569 5.4e-81 305.4 333 58.0
Eucgr.E01365 Eucalyptus grandis HOM05D004411 ORTHO05D005569 7.0e-81 305.1 345 54.2
CiPaw.05G090700 Carya illinoinensis HOM05D004411 ORTHO05D005569 2.7e-80 303.1 347 54.5
Ca_05663_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 6.6e-79 298.5 367 50.4
Lj6g0013350 Lotus japonicus HOM05D004411 ORTHO05D005569 8.6e-79 298.1 344 52.6
ClCG10G005570 Citrullus lanatus HOM05D004411 ORTHO05D005569 1.1e-78 297.7 344 52.0
Ca_24447_v3 Cicer arietinum L. HOM05D004411 ORTHO05D005569 3.3e-78 296.2 362 50.3
Cc02_g24710 Coffea canephora HOM05D004411 ORTHO05D005569 4.3e-78 295.8 333 54.4
TWI38G2195 Tripterygium wilfordii HOM05D004411 ORTHO05D005569 4.3e-78 295.8 241 69.7
TAR627G0926 Trochodendron aralioides HOM05D004411 ORTHO05D005569 9.5e-78 294.7 362 50.8
Actinidia35328 Actinidia chinensis HOM05D004411 ORTHO05D005569 1.2e-77 294.3 347 53.3
Glyma.08G313000 Glycine max HOM05D004411 ORTHO05D005569 1.2e-77 294.3 335 53.4
Rhsim04G0001700 Rhododendron simsii HOM05D004411 ORTHO05D005569 1.2e-77 294.3 343 53.9
vmacro09736 Vaccinium macrocarpon HOM05D004411 ORTHO05D005569 1.2e-77 294.3 341 52.8
Medtr3g019330 Medicago truncatula HOM05D004411 ORTHO05D005569 6.1e-77 292.0 360 51.9
Psat5g216880 Pisum sativum HOM05D004411 ORTHO05D005569 1.0e-76 291.2 348 52.9
MD11G1222400 Malus domestica HOM05D004411 ORTHO05D005569 1.8e-76 290.4 314 57.0
RcHm_v2.0_Chr1g0330851 Rosa chinensis HOM05D004411 ORTHO05D005569 5.2e-76 288.9 211 73.9
CAN.G337.104 Capsicum annuum HOM05D004411 ORTHO05D005569 6.8e-76 288.5 334 52.4
Migut.H01843 Erythranthe guttata HOM05D004411 ORTHO05D005569 6.8e-76 288.5 364 50.0
Lalb_Chr18g0049751 Lupinus albus HOM05D004411 ORTHO05D005569 1.2e-75 287.7 346 50.6
MELO3C003591.2 Cucumis melo HOM05D004411 ORTHO05D005569 7.5e-75 285.0 344 50.0
Rhsim04G0000600 Rhododendron simsii HOM05D004411 ORTHO05D005569 6.4e-74 282.0 359 51.5
Solyc07g064300.3 Solanum lycopersicum HOM05D004411 ORTHO05D005569 1.1e-73 281.2 332 51.2
Sed0027425 Sechium edule HOM05D004411 ORTHO05D005569 1.8e-73 280.4 340 50.6
Medtr4g088440 Medicago truncatula HOM05D004411 ORTHO05D005569 2.4e-73 280.0 260 60.4
ECA236G1785 Erigeron canadensis HOM05D004411 ORTHO05D005569 3.2e-73 279.6 340 51.8
Peaxi162Scf00450g00868 Petunia axillaris HOM05D004411 ORTHO05D005569 4.1e-73 279.3 335 52.2
TAR624G0740 Trochodendron aralioides HOM05D004411 ORTHO05D005569 4.1e-73 279.3 340 51.2
TPR.G3855 Trifolium pratense HOM05D004411 ORTHO05D005569 7.0e-73 278.5 389 46.5
Lsat_1_v5_gn_7_109101 Lactuca sativa HOM05D004411 ORTHO05D005569 2.7e-72 276.6 325 53.8
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 3.5e-72 276.2 363 53.2
MSTRG.12964 Avicennia marina HOM05D004411 ORTHO05D005569 7.8e-72 275.0 362 50.6
CiPaw.11G186800 Carya illinoinensis HOM05D004411 ORTHO05D005569 7.8e-72 275.0 228 68.4
CsaV3_3G017510 Cucumis sativus L. HOM05D004411 ORTHO05D005569 7.8e-72 275.0 350 49.1
PGR083G2632 Punica granatum HOM05D004411 ORTHO05D005569 7.8e-72 275.0 341 52.2
Nitab4.5_0009551g0010 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.9e-70 270.4 358 49.4
Phvul.006G038300 Phaseolus vulgaris HOM05D004411 ORTHO05D005569 4.3e-70 269.2 341 50.7
THA.LOC104798777 Tarenaya hassleriana HOM05D004411 ORTHO05D005569 4.3e-70 269.2 334 49.1
Oeu021397.1 Olea europaea HOM05D004411 ORTHO05D005569 5.6e-70 268.9 247 60.3
Lj2g0018498 Lotus japonicus HOM05D004411 ORTHO05D005569 1.6e-69 267.3 350 49.7
Glyma.08G318600 Glycine max HOM05D004411 ORTHO05D005569 4.7e-69 265.8 307 52.8
HanXRQChr11g0336281 Helianthus annuus HOM05D004411 ORTHO05D005569 1.8e-68 263.8 348 50.3
PSO210G7535 Papaver somniferum HOM05D004411 ORTHO05D005569 4.0e-68 262.7 337 48.7
SalBow7G1998 Salvia bowleyana HOM05D004411 ORTHO05D005569 5.2e-68 262.3 378 48.1
DCAR_008678 Daucus carota HOM05D004411 ORTHO05D005569 1.2e-67 261.2 334 49.1
AUR62006758 Chenopodium quinoa HOM05D004411 ORTHO05D005569 4.9e-66 255.8 353 49.3
PSO210G6597 Papaver somniferum HOM05D004411 ORTHO05D005569 8.3e-66 255.0 358 46.9
arahy.Tifrunner.gnm1.ann1.01DGNM Arachis hypogaea HOM05D004411 ORTHO05D005569 1.9e-65 253.8 341 47.8
AT1G50910 Arabidopsis thaliana HOM05D004411 ORTHO05D005569 3.2e-65 253.1 298 52.3
AL1G58640 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 3.5e-64 249.6 298 51.0
Aa31LG10G3320 Aethionema arabicum HOM05D004411 ORTHO05D005569 3.0e-63 246.5 344 45.3
CARHR040960 Cardamine hirsuta HOM05D004411 ORTHO05D005569 3.9e-63 246.1 290 51.7
unitig_0.g2388 Utricularia gibba HOM05D004411 ORTHO05D005569 5.0e-63 245.7 266 53.8
arahy.Tifrunner.gnm1.ann1.7KL5HB Arachis hypogaea HOM05D004411 ORTHO05D005569 8.6e-63 245.0 345 45.2
Carub.0001s3986 Capsella rubella HOM05D004411 ORTHO05D005569 1.1e-62 244.6 296 49.7
Thhalv10011488m.g Eutrema salsugineum HOM05D004411 ORTHO05D005569 1.9e-62 243.8 282 52.8
SGA_v2.0_scaffold9G05058 Striga asiatica HOM05D004411 ORTHO05D005569 1.6e-61 240.7 398 44.2
Manes.03G127300 Manihot esculenta HOM05D004411 ORTHO05D005569 2.1e-61 240.4 267 53.9
Sp1g37650 Schrenkiella parvula HOM05D004411 ORTHO05D005569 3.6e-61 239.6 346 46.2
BcaB07g33532 Brassica carinata HOM05D004411 ORTHO05D005569 3.4e-59 233.0 264 54.2
FAN21G4008 Fragaria x ananassa HOM05D004411 ORTHO05D005569 3.4e-59 233.0 357 47.9
BraA06t23489Z Brassica rapa HOM05D004411 ORTHO05D005569 9.9e-59 231.5 245 55.5
Cpa.g.sc12.166 Carica papaya HOM05D004411 ORTHO05D005569 1.3e-58 231.1 343 45.2
BcaC08g43264 Brassica carinata HOM05D004411 ORTHO05D005569 2.9e-58 229.9 297 49.8
C06p06080 Brassica napus HOM05D004411 ORTHO05D005569 2.9e-58 229.9 297 49.8
BolC6t35721H Brassica oleracea HOM05D004411 ORTHO05D005569 2.9e-58 229.9 297 49.8
AL8G37460 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 6.4e-58 228.8 195 65.1
Oeu005458.1 Olea europaea HOM05D004411 ORTHO05D005569 3.5e-56 223.0 385 42.9
AL2G19790 Arabidopsis lyrata HOM05D004411 ORTHO05D005569 7.8e-56 221.9 182 66.5
A06p02820 Brassica napus HOM05D004411 ORTHO05D005569 2.3e-55 220.3 342 45.0
CDE07G0547 Ceratophyllum demersum HOM05D004411 ORTHO05D005569 3.0e-55 219.9 340 42.9
Lalb_Chr15g0080391 Lupinus albus HOM05D004411 ORTHO05D005569 6.6e-55 218.8 184 66.3
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-53 214.5 398 43.0
Nn1g07099 Nelumbo nucifera HOM05D004411 ORTHO05D005569 6.2e-53 212.2 177 67.8
SHI31835 Sapria himalayana HOM05D004411 ORTHO05D005569 6.2e-53 212.2 251 51.4
Aqoxy3G00168 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 2.4e-52 210.3 329 45.0
ATR0564G530 Amborella trichopoda HOM05D004411 ORTHO05D005569 9.9e-51 204.9 335 42.1
Zm00001eb253190 Zea mays HOM05D004411 ORTHO05D005569 9.9e-51 204.9 239 51.0
Aqoxy7G03937 Aquilegia oxysepala HOM05D004411 ORTHO05D005569 8.4e-50 201.8 329 43.2
BolC5t32046H Brassica oleracea HOM05D004411 ORTHO05D005569 1.1e-49 201.4 213 55.4
PGSC0003DMG402013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.1e-49 201.4 339 40.7
BcaB06g26197 Brassica carinata HOM05D004411 ORTHO05D005569 1.6e-48 197.6 219 53.9
Zm00001eb317630 Zea mays HOM05D004411 ORTHO05D005569 8.6e-47 191.8 339 40.7
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 2.5e-46 190.3 340 41.2
HPP92_013625 Vanilla planifolia HOM05D004411 ORTHO05D005569 4.3e-46 189.5 328 42.4
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.6e-45 187.6 333 42.6
BcaB02g11193 Brassica carinata HOM05D004411 ORTHO05D005569 2.8e-45 186.8 334 42.2
C05p33200 Brassica napus HOM05D004411 ORTHO05D005569 2.8e-45 186.8 192 57.3
Nitab4.5_0000397g0320 Nicotiana tabacum HOM05D004411 ORTHO05D005569 2.4e-44 183.7 368 37.8
Os09g0504900 Oryza sativa ssp. japonica HOM05D004411 ORTHO05D005569 7.6e-43 178.7 327 41.0
SEGI_26616 Sequoiadendron giganteum HOM05D004411 ORTHO05D005569 9.9e-43 178.3 281 42.3
Ah.06g195930 Amaranthus hybridus HOM05D004411 ORTHO05D005569 1.3e-42 177.9 222 51.8
PSO210G0554 Papaver somniferum HOM05D004411 ORTHO05D005569 7.1e-41 172.2 273 42.5
Nitab4.5_0000622g0210 Nicotiana tabacum HOM05D004411 ORTHO05D005569 1.2e-40 171.4 176 57.4
COL.COLO4_09627 Corchorus olitorius HOM05D004411 ORTHO05D005569 2.7e-40 170.2 235 48.9
Sopen07g032450 Solanum pennellii HOM05D004411 ORTHO05D005569 3.0e-39 166.8 229 47.6
MD03G1208200 Malus domestica HOM05D004411 ORTHO05D005569 1.1e-38 164.9 316 41.5
PSO339G6638 Papaver somniferum HOM05D004411 ORTHO05D005569 1.9e-33 147.5 170 48.2
Glyma.09G101400 Glycine max HOM05D004411 ORTHO05D005569 4.6e-32 142.9 200 46.0
PGSC0003DMG401013923 Solanum tuberosum HOM05D004411 ORTHO05D005569 3.9e-31 139.8 198 42.9
ECA236G1239 Erigeron canadensis HOM05D004411 ORTHO05D005569 4.8e-29 132.9 239 43.1
VMungo1383G2244 Vigna mungo HOM05D004411 ORTHO05D005569 4.5e-27 126.3 122 60.7
DCAR_011015 Daucus carota HOM05D004411 ORTHO05D005569 1.3e-26 124.8 183 42.6
EL10Ac9g22233 Beta vulgaris HOM05D004411 ORTHO05D005569 4.9e-26 122.9 199 45.2
VMungo0540G0671 Vigna mungo HOM05D004411 ORTHO05D005569 4.9e-26 122.9 204 42.6
Pp3c25_11530 Physcomitrium patens HOM05D004411 ORTHO05D005569 4.6e-24 116.3 213 37.1
VMungo1383G3213 Vigna mungo HOM05D004411 ORTHO05D005569 1.3e-23 114.8 191 41.9
A05p19860 Brassica napus HOM05D004411 ORTHO05D005569 7.4e-22 109.0 123 52.0
BraA05t20891Z Brassica rapa HOM05D004411 ORTHO05D005569 7.4e-22 109.0 123 52.0
Hma1.2p1_3713F.1_g337350 Hydrangea macrophylla HOM05D004411 ORTHO05D005569 3.7e-21 106.7 85 68.2
Cc09_g02490 Coffea canephora HOM05D004411 ORTHO05D005569 1.4e-20 104.8 93 63.4
Glyma.09G101500 Glycine max HOM05D004411 ORTHO05D005569 2.0e-19 100.9 84 64.3
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 2.6e-19 100.5 86 61.6
Cc00_g16970 Coffea canephora HOM05D004411 ORTHO05D005569 2.2e-18 97.4 114 50.0
Oeu034511.1 Olea europaea HOM05D004411 ORTHO05D005569 7.1e-17 92.4 81 59.3
Cc02_g22100 Coffea canephora HOM05D004411 ORTHO05D005569 1.1e-14 85.1 107 48.6
Lalb_Chr15g0080381 Lupinus albus HOM05D004411 ORTHO05D005569 1.5e-14 84.7 109 40.4
SMO367G0149 Selaginella moellendorffii HOM05D004411 ORTHO05D005569 1.5e-14 84.7 257 29.6
Haze_07158 Corylus avellana HOM05D004411 ORTHO05D005569 9.7e-14 82.0 68 63.2
Mapoly0160s0028 Marchantia polymorpha HOM05D004411 ORTHO05D005569 1.3e-13 81.6 203 31.5
AagrBONN_evm.TU.Sc2ySwM_344.3992 Anthoceros agrestis HOM05D004411 ORTHO05D005569 2.2e-10 70.9 113 40.7
GSVIVG01036883001 Vitis vinifera HOM05D004411 ORTHO05D005569 3.2e-09 67.0 55 61.8
arahy.Tifrunner.gnm1.ann1.H97TV8 Arachis hypogaea HOM05D004411 ORTHO05D005569 2.1e-08 64.3 83 47.0
arahy.Tifrunner.gnm1.ann1.ZM7UYF Arachis hypogaea HOM05D004411 ORTHO05D005569 6.1e-08 62.8 81 45.7
PGSC0003DMG400013925 Solanum tuberosum HOM05D004411 ORTHO05D005569 1.0e-07 62.0 49 63.3
CBR_g6715 Chara braunii HOM05D004411 ORTHO05D005569 1.5e-06 58.2 155 30.3


User provided reference genes

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