Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 3.2e-284 981.1 500 100.0
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.1e-196 690.3 486 70.0
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.0e-193 679.5 486 68.5
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 2.0e-193 679.5 489 68.5
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.9e-188 662.9 487 68.4
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 2.1e-187 659.4 489 67.3
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 3.6e-187 658.7 505 65.3
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.7e-187 658.3 485 67.8
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.3e-186 656.0 488 65.6
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.2e-185 653.7 489 65.6
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 9.9e-185 650.6 489 66.1
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 9.9e-185 650.6 488 66.2
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.7e-184 649.8 488 66.4
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 7.8e-182 641.0 481 65.7
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.0e-181 639.0 485 66.2
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 5.1e-181 638.3 489 64.2
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.9e-180 636.3 489 64.2
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.2e-179 633.6 487 64.5
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 6.2e-179 631.3 487 64.7
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 5.2e-178 628.2 489 63.0
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 5.2e-178 628.2 487 63.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 8.9e-178 627.5 484 64.9
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.0e-177 626.3 488 63.5
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.4e-177 625.5 484 64.5
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 4.4e-177 625.2 492 62.6
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.9e-176 622.5 484 64.0
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.1e-175 620.5 484 64.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.4e-175 619.4 543 59.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 5.4e-175 618.2 488 63.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 9.2e-175 617.5 489 62.4
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 9.2e-175 617.5 488 61.9
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.6e-174 616.7 488 63.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.6e-174 616.7 488 63.3
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.6e-174 616.7 486 64.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 2.1e-174 616.3 488 63.1
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 3.5e-174 615.5 487 63.2
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 4.6e-174 615.1 515 61.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.6e-174 615.1 489 62.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.0e-173 614.0 487 62.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.0e-173 614.0 487 62.6
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.3e-173 612.8 488 63.3
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.0e-173 612.5 491 63.3
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.9e-173 612.1 487 62.0
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.9e-173 612.1 485 63.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 8.7e-173 610.9 487 62.4
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 2.5e-172 609.4 492 62.0
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 2.5e-172 609.4 489 60.7
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 2.5e-172 609.4 488 62.7
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 3.3e-172 609.0 485 62.7
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.6e-172 608.2 487 62.2
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 7.3e-172 607.8 476 62.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.1e-171 606.3 489 62.2
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.1e-171 606.3 488 62.3
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.8e-171 605.9 488 62.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.8e-170 603.2 489 60.1
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.0e-170 602.1 488 61.9
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 5.3e-170 601.7 484 62.4
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 6.9e-170 601.3 488 60.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 9.0e-170 600.9 498 61.2
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 9.0e-170 600.9 488 61.9
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-169 600.5 485 59.6
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.5e-169 600.1 485 59.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 2.0e-169 599.7 489 60.9
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.0e-169 599.7 488 59.4
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.6e-169 599.4 485 59.6
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.4e-169 599.0 485 59.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 4.4e-169 598.6 484 60.1
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 4.4e-169 598.6 486 61.3
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 5.8e-169 598.2 489 61.8
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 1.3e-168 597.0 484 59.7
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.7e-168 596.7 488 61.5
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.9e-168 595.9 484 59.5
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.9e-168 595.9 485 60.2
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 6.4e-168 594.7 485 59.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 8.4e-168 594.3 485 62.3
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 8.4e-168 594.3 484 59.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 4.2e-167 592.0 486 59.1
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.7e-165 586.6 485 58.6
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.1e-164 583.9 484 57.9
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.5e-164 583.6 686 48.0
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.9e-164 583.2 484 60.7
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 4.3e-164 582.0 484 58.1
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 5.6e-164 581.6 488 60.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 2.8e-163 579.3 487 57.7
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 6.2e-163 578.2 488 59.8
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.5e-161 573.5 488 59.4
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.9e-159 566.6 480 59.6
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.1e-158 563.1 474 60.1
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 3.9e-157 558.9 452 60.2
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 6.7e-157 558.1 486 58.4
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 8.1e-155 551.2 449 60.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 4.9e-144 515.4 444 59.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.5e-143 513.1 416 62.0
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 7.1e-143 511.5 487 51.5
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 5.9e-137 491.9 479 52.0
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.4e-135 487.3 314 74.5
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 2.8e-115 419.9 504 46.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.5e-112 408.7 418 50.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.6e-110 402.9 478 44.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 7.5e-108 395.2 266 72.2
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.9e-103 380.6 488 44.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 7.2e-103 378.6 489 42.9
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 4.0e-101 372.9 342 54.7
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 8.3e-99 365.2 311 56.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 4.5e-97 359.4 489 40.1
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.8e-77 292.4 342 47.1
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 8.9e-69 265.4 177 75.1
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 1.2e-68 265.0 367 37.3
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.7e-67 261.2 312 42.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.6e-65 254.6 177 71.8
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.6e-64 249.2 272 42.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.1e-56 223.0 216 51.9
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 8.7e-56 222.2 213 53.1
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 9.9e-52 208.8 139 74.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.1e-45 187.2 123 69.9
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.6e-44 182.6 142 62.0
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.3e-39 167.2 125 67.2
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.8e-30 137.5 103 63.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.3e-29 133.3 222 36.9
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 5.1e-24 116.7 73 74.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 2.2e-22 111.3 544 22.4
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 3.7e-22 110.5 86 60.5
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-21 109.0 136 37.5
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 1.8e-21 108.2 215 32.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 4.5e-20 103.6 113 48.7
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.1e-17 94.7 70 55.7
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 6.1e-17 93.2 102 45.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 2.6e-12 77.8 110 38.2
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.6e-12 77.8 138 38.4
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 3.4e-12 77.4 216 27.3
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.3e-11 75.5 131 35.9
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.2e-11 74.7 92 43.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 8.5e-11 72.8 58 65.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.4e-10 72.0 89 42.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.9e-08 63.9 46 54.3
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.1e-07 62.4 36 75.0
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 4.4e-07 60.5 97 37.1
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 7.4e-07 59.7 36 66.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 9.7e-07 59.3 55 50.9
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 2.2e-06 58.2 60 50.0
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.7e-06 57.4 93 43.0


User provided reference genes

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